Aliases for DANT1 Gene

Subcategory (RNA class) for DANT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for DANT1 Gene

  • DXZ4 Associated Non-Coding Transcript 1, Proximal 2 3 5
  • DANT1 2 168
  • DXZ4 Associated Noncoding Transcript 1 3
  • NONHSAG055151 92
  • HSALNG0139654 167

External Ids for DANT1 Gene

Previous GeneCards Identifiers for DANT1 Gene

  • GC0XU902202

Summaries for DANT1 Gene

GeneCards Summary for DANT1 Gene

DANT1 (DXZ4 Associated Non-Coding Transcript 1, Proximal) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DANT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DANT1 Gene

Genomics for DANT1 Gene

GeneHancer (GH) Regulatory Elements for DANT1 Gene

Promoters and enhancers for DANT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ115839 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 505.9 +0.2 200 3.7 ZNF10 POLR2A YY1 PHF8 CHD1 TAF1 EZH2 CTBP2 TAF7 DANT1 KM192212 EEF1GP5 DANT2 lnc-LRCH2-6 KM192214
GH0XJ115689 Enhancer 0.8 ENCODE dbSUPER 18.2 -150.3 -150334 1.7 CTCF JUND TRIM28 RAD21 TRIM22 SMC3 ZNF184 MAFK FOS ZNF654 DANT1 ENSG00000228532 EEF1GP5 DANT2 L13708-005 RF00017-8625
GH0XJ115692 Enhancer 0.6 ENCODE dbSUPER 17.5 -147.1 -147148 1.8 MAX HNF4A NANOG SP1 DANT1 ENSG00000228532 EEF1GP5 L13708-005 RF00017-8625 DANT2
GH0XJ115695 Enhancer 0.6 ENCODE dbSUPER 17.8 -145.0 -144951 1.6 POU5F1 NANOG POLR2A DANT1 ENSG00000228532 EEF1GP5 L13708-005 DANT2
GH0XJ115682 Enhancer 0.8 Ensembl ENCODE dbSUPER 11.4 -158.4 -158433 0.5 TEAD4 NANOG CHD7 POU5F1 KDM1A ENSG00000228532 DANT1 L13708-005 EEF1GP5 RF00017-8625
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DANT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DANT1 Gene

Genomic Locations for DANT1 Gene
chrX:115,840,964-115,905,527
(GRCh38/hg38)
Size:
64,564 bases
Orientation:
Plus strand
chrX:114,957,297-114,959,383
(GRCh37/hg19)
Size:
2,087 bases
Orientation:
Plus strand

Genomic View for DANT1 Gene

Genes around DANT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DANT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DANT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DANT1 Gene

Proteins for DANT1 Gene

Post-translational modifications for DANT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DANT1 Gene

Domains & Families for DANT1 Gene

Gene Families for DANT1 Gene

genes like me logo Genes that share domains with DANT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DANT1 Gene

Function for DANT1 Gene

Phenotypes From GWAS Catalog for DANT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DANT1 Gene

Localization for DANT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DANT1 Gene

Pathways & Interactions for DANT1 Gene

PathCards logo

SuperPathways for DANT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for DANT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DANT1 Gene

Drugs & Compounds for DANT1 Gene

No Compound Related Data Available

Transcripts for DANT1 Gene

mRNA/cDNA for DANT1 Gene

7 RNACentral transcripts :
2 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
2 LncBook transcripts :
6 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for DANT1 Gene

No ASD Table

Relevant External Links for DANT1 Gene

GeneLoc Exon Structure for
DANT1

Expression for DANT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DANT1 Gene

Orthologs for DANT1 Gene

Evolution for DANT1 Gene

ENSEMBL:
Gene Tree for DANT1 (if available)
TreeFam:
Gene Tree for DANT1 (if available)

No data available for Orthologs for DANT1 Gene

Paralogs for DANT1 Gene

No data available for Paralogs for DANT1 Gene

Variants for DANT1 Gene

Additional dbSNP identifiers (rs#s) for DANT1 Gene

Additional Variant Information for DANT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DANT1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DANT1 Gene

Disorders for DANT1 Gene

Additional Disease Information for DANT1

No disorders were found for DANT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DANT1 Gene

Publications for DANT1 Gene

  1. Two novel DXZ4-associated long noncoding RNAs show developmental changes in expression coincident with heterochromatin formation at the human (Homo sapiens) macrosatellite repeat. (PMID: 26188586) Figueroa DM … Chadwick BP (Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2015) 2 3 54

Products for DANT1 Gene

Sources for DANT1 Gene