Aliases for DANT1 Gene

Subcategory (RNA class) for DANT1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for DANT1 Gene

  • DXZ4 Associated Non-Coding Transcript 1, Proximal 2 3 5
  • DANT1 2 5 165
  • DXZ4 Associated Noncoding Transcript 1 3
  • NONHSAG055151.2 91
  • HSALNG0139654 164

External Ids for DANT1 Gene

Previous GeneCards Identifiers for DANT1 Gene

  • GC0XU902202

Summaries for DANT1 Gene

GeneCards Summary for DANT1 Gene

DANT1 (DXZ4 Associated Non-Coding Transcript 1, Proximal) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for DANT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for DANT1 Gene

Genomics for DANT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for DANT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ115839 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE dbSUPER 605.9 +0.2 200 3.7 POLR2A ZNF10 YY1 TAF1 EZH2 DANT1 EEF1GP5 DANT2 lnc-LRCH2-6 PLS3 AGTR2
GH0XJ115689 Enhancer 0.8 ENCODE dbSUPER 18.2 -150.3 -150334 1.7 CTCF PRDM10 ZNF629 PATZ1 RAD21 TRIM22 JUND SMC3 ZNF184 MAFK DANT1 ENSG00000228532 EEF1GP5 DANT2 L13708-004 RF00017-8627 PLS3 AGTR2
GH0XJ115692 Enhancer 0.6 ENCODE dbSUPER 17.5 -147.1 -147148 1.8 SP1 HNF4A MAX NANOG DANT1 ENSG00000228532 EEF1GP5 L13708-004 RF00017-8627 PLS3 DANT2 AGTR2
GH0XJ115695 Enhancer 0.6 ENCODE dbSUPER 17.8 -145.0 -144951 1.6 NANOG POLR2A POU5F1 DANT1 ENSG00000228532 EEF1GP5 L13708-004 PLS3 DANT2 AGTR2
GH0XJ115682 Enhancer 0.7 Ensembl ENCODE dbSUPER 11.4 -158.4 -158433 0.5 TEAD4 KDM1A POU5F1 ENSG00000228532 DANT1 L13708-004 RF00017-8627 EEF1GP5 PLS3 AGTR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around DANT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for DANT1 Gene

Genomic Locations for DANT1 Gene
chrX:115,840,964-115,905,527
(GRCh38/hg38)
Size:
64,564 bases
Orientation:
Plus strand
chrX:114,957,297-114,959,383
(GRCh37/hg19)
Size:
2,087 bases
Orientation:
Plus strand

Genomic View for DANT1 Gene

Genes around DANT1 on UCSC Golden Path with GeneCards custom track
DANT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
DANT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DANT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DANT1 Gene

Proteins for DANT1 Gene

No data available for DME Specific Peptides for DANT1 Gene

Domains & Families for DANT1 Gene

Gene Families for DANT1 Gene

genes like me logo Genes that share domains with DANT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for DANT1 Gene

Function for DANT1 Gene

Phenotypes From GWAS Catalog for DANT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DANT1 Gene

Localization for DANT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DANT1 Gene

Pathways & Interactions for DANT1 Gene

PathCards logo

SuperPathways for DANT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DANT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for DANT1 Gene

Drugs & Compounds for DANT1 Gene

No Compound Related Data Available

Transcripts for DANT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for DANT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005F004D_9606 lncRNA 444 4

Ensembl: ENST00000451869 (view in UCSC) ,

LncBook: HSALNT0285571,

LNCipedia: DANT1:1, DANT1:5,

NONCODE: NONHSAT138263.2,

URS000049C0BD_9606 lncRNA 280 4

Ensembl: ENST00000415394 (view in UCSC) ,

LncBook: HSALNT0285573,

LNCipedia: DANT1:3, DANT1:6,

NONCODE: NONHSAT138265.2,

URS0000BC4443_9606 lncRNA 916 2

HGNC: 50863,

RefSeq: NR_147172,

URS0000BC4444_9606 lncRNA 824 1

RefSeq: NR_147173,

URS00008BA617_9606 lncRNA 15329 2

LNCipedia: DANT1:2,

NONCODE: NONHSAT138264.2,

DANT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for DANT1 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for DANT1 Gene

No ASD Table

Relevant External Links for DANT1 Gene

GeneLoc Exon Structure for
DANT1

Expression for DANT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DANT1 Gene

Orthologs for DANT1 Gene

Evolution for DANT1 Gene

ENSEMBL:
Gene Tree for DANT1 (if available)
TreeFam:
Gene Tree for DANT1 (if available)

No data available for Orthologs for DANT1 Gene

Paralogs for DANT1 Gene

No data available for Paralogs for DANT1 Gene

Variants for DANT1 Gene

Additional dbSNP identifiers (rs#s) for DANT1 Gene

Additional Variant Information for DANT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DANT1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DANT1 Gene

Disorders for DANT1 Gene

Additional Disease Information for DANT1

No disorders were found for DANT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DANT1 Gene

Publications for DANT1 Gene

  1. Two novel DXZ4-associated long noncoding RNAs show developmental changes in expression coincident with heterochromatin formation at the human (Homo sapiens) macrosatellite repeat. (PMID: 26188586) Figueroa DM … Chadwick BP (Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2015) 2 3

Products for DANT1 Gene

Sources for DANT1 Gene