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Aliases for CYYR1-AS1 Gene

Subcategory (RNA class) for CYYR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CYYR1-AS1 Gene

  • Cysteine And Tyrosine Rich 1 Antisense RNA 1 2 3 5
  • Cysteine/Tyrosine-Rich 1 Antisense RNA 1 2 3

External Ids for CYYR1-AS1 Gene

Previous GeneCards Identifiers for CYYR1-AS1 Gene

  • GC21P027766

Summaries for CYYR1-AS1 Gene

GeneCards Summary for CYYR1-AS1 Gene

CYYR1-AS1 (Cysteine And Tyrosine Rich 1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CYYR1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYYR1-AS1 Gene

Genomics for CYYR1-AS1 Gene

GeneHancer (GH) Regulatory Elements for CYYR1-AS1 Gene

Promoters and enhancers for CYYR1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J026388 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 -3.5 -3517 4.2 JUN EP300 SP1 GATA3 JUND POLR2A ESR1 FOS FOSL2 RCOR1 CYYR1-AS1 ENSG00000232692
GH21J026403 Enhancer 0.8 Ensembl ENCODE 0.4 +11.8 11794 3.5 BACH1 MAFG EBF1 MAFF ZNF316 ZBTB48 NFE2 FOS EMSY MAFK CYYR1-AS1 ENSG00000232692 LOC105372758
GH21J026385 Enhancer 0.4 dbSUPER 0.4 -6.9 -6946 2.5 ZNF680 ESR1 ENSG00000232692 CYYR1-AS1
GH21J026384 Enhancer 0.2 dbSUPER 0.4 -8.6 -8601 0.7 CYYR1 ENSG00000273492 ENSG00000232692 CYYR1-AS1
GH21J026447 Enhancer 0.4 Ensembl ENCODE 0.2 +55.2 55212 1.9 ENSG00000273115 LOC105372758 CYYR1-AS1 ENSG00000232692
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CYYR1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CYYR1-AS1 Gene

Genomic Locations for CYYR1-AS1 Gene
chr21:26,393,635-26,569,263
(GRCh38/hg38)
Size:
175,629 bases
Orientation:
Plus strand
chr21:27,765,954-27,941,571
(GRCh37/hg19)

Genomic View for CYYR1-AS1 Gene

Genes around CYYR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYYR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYYR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYYR1-AS1 Gene

Proteins for CYYR1-AS1 Gene

Post-translational modifications for CYYR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYYR1-AS1 Gene

Domains & Families for CYYR1-AS1 Gene

Gene Families for CYYR1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CYYR1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYYR1-AS1 Gene

Function for CYYR1-AS1 Gene

Phenotypes From GWAS Catalog for CYYR1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYYR1-AS1 Gene

Localization for CYYR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYYR1-AS1 Gene

Pathways & Interactions for CYYR1-AS1 Gene

SuperPathways for CYYR1-AS1 Gene

No Data Available

Interacting Proteins for CYYR1-AS1 Gene

Gene Ontology (GO) - Biological Process for CYYR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYYR1-AS1 Gene

Drugs & Compounds for CYYR1-AS1 Gene

No Compound Related Data Available

Transcripts for CYYR1-AS1 Gene

mRNA/cDNA for CYYR1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYYR1-AS1 Gene

No ASD Table

Relevant External Links for CYYR1-AS1 Gene

GeneLoc Exon Structure for
CYYR1-AS1
ECgene alternative splicing isoforms for
CYYR1-AS1

Expression for CYYR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYYR1-AS1 Gene

genes like me logo Genes that share expression patterns with CYYR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYYR1-AS1 Gene

Orthologs for CYYR1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for CYYR1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC101056792 33
  • 98.76 (n)
Species where no ortholog for CYYR1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CYYR1-AS1 Gene

ENSEMBL:
Gene Tree for CYYR1-AS1 (if available)
TreeFam:
Gene Tree for CYYR1-AS1 (if available)

Paralogs for CYYR1-AS1 Gene

No data available for Paralogs for CYYR1-AS1 Gene

Variants for CYYR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for CYYR1-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000017146 -- 26,458,554(+) G/C intron_variant
rs1000029615 -- 26,430,984(+) T/G intron_variant
rs1000039315 -- 26,459,977(+) C/A/G intron_variant
rs1000083386 -- 26,425,534(+) C/T intron_variant
rs1000085472 -- 26,467,428(+) A/T intron_variant

Additional Variant Information for CYYR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYYR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYYR1-AS1 Gene

Disorders for CYYR1-AS1 Gene

Additional Disease Information for CYYR1-AS1

No disorders were found for CYYR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYYR1-AS1 Gene

Publications for CYYR1-AS1 Gene

  1. Characterization of human gene locus CYYR1: a complex multi-transcript system. (PMID: 24981926) Casadei R … Frabetti F (Molecular biology reports 2014) 2 3 58

Products for CYYR1-AS1 Gene

Sources for CYYR1-AS1 Gene

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