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Aliases for CYP4F29P Gene

Subcategory (RNA class) for CYP4F29P Gene

lncRNA

Aliases for CYP4F29P Gene

  • Cytochrome P450 Family 4 Subfamily F Member 29, Pseudogene 2 3 5
  • Cytochrome P450, Family 4, Subfamily F, Polypeptide 3-Like Pseudogene 2 3
  • Cytochrome P450, Family 4, Subfamily F, Polypeptide 29, Pseudogene 2 3
  • Cytochrome P450, Subfamily IVF, Polypeptide 3-Like Pseudogene 2 3
  • Chromosome 21 Open Reading Frame 15 2
  • Cytochrome P450 Pseudogene 3
  • CYP4F-Se4[6:7:8] 3
  • 4F-Se4[6:7:8] 3
  • C21orf15 3
  • CYP4F3LP 3

External Ids for CYP4F29P Gene

ORGUL Members for CYP4F29P Gene

Previous HGNC Symbols for CYP4F29P Gene

  • C21orf15
  • CYP4F3LP

Previous GeneCards Identifiers for CYP4F29P Gene

  • GC21M015219

Summaries for CYP4F29P Gene

GeneCards Summary for CYP4F29P Gene

CYP4F29P (Cytochrome P450 Family 4 Subfamily F Member 29, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for CYP4F29P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYP4F29P Gene

Genomics for CYP4F29P Gene

GeneHancer (GH) Regulatory Elements for CYP4F29P Gene

Promoters and enhancers for CYP4F29P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I013979 Promoter/Enhancer 1.3 Ensembl ENCODE 20.3 -131.6 -131637 1.2 HDAC1 ATF1 RB1 SIN3A KLF5 EGR1 SMARCA5 REST ELF1 NFIC ANKRD20A11P CYP4F29P RBM11 PIR53268
GH21I014215 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 5.2 -367.9 -367916 1.4 MXI1 RB1 E4F1 ZNF335 CCNT2 E2F1 CTBP1 GLIS2 POLR2A EGR1 RBM11 CYP4F29P ABCC13
GH21I014614 Enhancer 0.7 ENCODE dbSUPER 4.4 -768.5 -768540 4 SP1 ZNF316 POLR2A POU5F1 CEBPB EP300 LOC388813 SAMSN1 SAMSN1-AS1 CYP4F29P
GH21I014612 Enhancer 0.3 dbSUPER 4.5 -764.6 -764641 1.6 NFIC SAMSN1 SAMSN1-AS1 LOC388813 CYP4F29P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CYP4F29P on UCSC Golden Path with GeneCards custom track

Genomic Locations for CYP4F29P Gene

Genomic Locations for CYP4F29P Gene
chr21:13,843,133-13,848,364
(GRCh38/hg38)
Size:
5,232 bases
Orientation:
Minus strand
chr21:15,215,454-15,220,685
(GRCh37/hg19)

Genomic View for CYP4F29P Gene

Genes around CYP4F29P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYP4F29P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYP4F29P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYP4F29P Gene

Proteins for CYP4F29P Gene

Post-translational modifications for CYP4F29P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYP4F29P Gene

Domains & Families for CYP4F29P Gene

Gene Families for CYP4F29P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CYP4F29P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYP4F29P Gene

Function for CYP4F29P Gene

Phenotypes From GWAS Catalog for CYP4F29P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYP4F29P Gene

Localization for CYP4F29P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYP4F29P Gene

Pathways & Interactions for CYP4F29P Gene

SuperPathways for CYP4F29P Gene

No Data Available

Interacting Proteins for CYP4F29P Gene

Gene Ontology (GO) - Biological Process for CYP4F29P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYP4F29P Gene

Drugs & Compounds for CYP4F29P Gene

No Compound Related Data Available

Transcripts for CYP4F29P Gene

mRNA/cDNA for CYP4F29P Gene

(14) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYP4F29P Gene

No ASD Table

Relevant External Links for CYP4F29P Gene

GeneLoc Exon Structure for
CYP4F29P
ECgene alternative splicing isoforms for
CYP4F29P

Expression for CYP4F29P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYP4F29P Gene

mRNA differential expression in normal tissues according to GTEx for CYP4F29P Gene

This gene is overexpressed in Esophagus - Mucosa (x19.4) and Brain - Nucleus accumbens (basal ganglia) (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of CYP4F29P Gene:

CYP4F29P
genes like me logo Genes that share expression patterns with CYP4F29P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYP4F29P Gene

Orthologs for CYP4F29P Gene

Evolution for CYP4F29P Gene

ENSEMBL:
Gene Tree for CYP4F29P (if available)
TreeFam:
Gene Tree for CYP4F29P (if available)

No data available for Orthologs for CYP4F29P Gene

Paralogs for CYP4F29P Gene

No data available for Paralogs for CYP4F29P Gene

Variants for CYP4F29P Gene

Sequence variations from dbSNP and Humsavar for CYP4F29P Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000088475 -- 13,848,095(-) G/A non_coding_transcript_variant
rs1000853606 -- 13,843,578(-) G/A intron_variant
rs1001032850 -- 13,847,371(-) C/G intron_variant
rs1001335242 -- 13,843,802(-) A/T intron_variant
rs1001743871 -- 13,843,997(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CYP4F29P Gene

Variant ID Type Subtype PubMed ID
dgv4378n100 CNV gain 25217958
dgv4381n100 CNV loss 25217958
dgv4382n100 CNV gain 25217958
dgv4383n100 CNV gain+loss 25217958
dgv4385n100 CNV gain 25217958
dgv7751n54 CNV gain 21841781
dgv7757n54 CNV gain 21841781
dgv93e203 CNV gain+loss 21179565
esv2751923 CNV loss 17911159
esv2758809 CNV gain+loss 17122850
esv33228 CNV gain 17666407
esv3568104 CNV loss 25503493
esv3646399 CNV loss 21293372
esv3646400 CNV gain 21293372
esv3893366 CNV loss 25118596
esv3893367 CNV gain 25118596
nsv1056303 CNV gain 25217958
nsv1058184 CNV gain 25217958
nsv1058202 CNV loss 25217958
nsv1059465 CNV gain 25217958
nsv1060399 CNV gain 25217958
nsv1062730 CNV loss 25217958
nsv3452 CNV deletion 18451855
nsv428383 CNV loss 18775914
nsv459093 CNV gain 19166990
nsv459094 CNV loss 19166990
nsv470877 CNV gain 18288195
nsv515654 CNV gain+loss 19592680
nsv587014 CNV loss 21841781
nsv587019 CNV gain 21841781
nsv587020 CNV loss 21841781
nsv965971 CNV duplication 23825009

Additional Variant Information for CYP4F29P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYP4F29P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CYP4F29P Gene

Disorders for CYP4F29P Gene

Additional Disease Information for CYP4F29P

No disorders were found for CYP4F29P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYP4F29P Gene

Publications for CYP4F29P Gene

  1. From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map. (PMID: 11707072) Reymond A … Antonarakis SE (Genomics 2001) 3 58
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 58

Products for CYP4F29P Gene

Sources for CYP4F29P Gene

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