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Aliases for CYP1B1-AS1 Gene

Subcategory (RNA class) for CYP1B1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CYP1B1-AS1 Gene

  • CYP1B1 Antisense RNA 1 2 3 5
  • CYP1B1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 2 Open Reading Frame 58 2
  • C2orf58 3

External Ids for CYP1B1-AS1 Gene

Previous HGNC Symbols for CYP1B1-AS1 Gene

  • C2orf58

Previous GeneCards Identifiers for CYP1B1-AS1 Gene

  • GC02P038302

Summaries for CYP1B1-AS1 Gene

GeneCards Summary for CYP1B1-AS1 Gene

CYP1B1-AS1 (CYP1B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CYP1B1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYP1B1-AS1 Gene

Genomics for CYP1B1-AS1 Gene

GeneHancer (GH) Regulatory Elements for CYP1B1-AS1 Gene

Promoters and enhancers for CYP1B1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I038070 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 555.8 +0.8 776 7.6 PKNOX1 FOXA2 ARNT SIN3A YY1 GLIS2 E2F8 ZNF143 KLF7 FOS CYP1B1 CYP1B1-AS1 ENSG00000272054 SRSF7 DHX57 ASS1P2 CEBPZ HEATR5B RMDN2
GH02I038095 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 16.7 +23.9 23859 4.6 PKNOX1 CLOCK ARNT NEUROD1 FEZF1 ZBTB7B GLIS2 ZNF213 KLF7 FOS ENSG00000272054 CYP1B1 CYP1B1-AS1 SRSF7 DHX57 ARHGEF33 RMDN2-AS1 HNRNPLL CEBPZ CDC42EP3
GH02I038173 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.5 +103.4 103441 6.3 PKNOX1 MAX BMI1 CEBPG BATF IRF4 RAD21 YY1 GATA3 POLR2A CYP1B1 CYP1B1-AS1 ENSG00000273006 GC02M038149 GC02M038108
GH02I038036 Enhancer 1.3 FANTOM5 Ensembl ENCODE 11.5 -35.8 -35816 2.9 HDGF SMAD1 BATF RAD21 SCRT2 ZNF143 ATF7 IKZF2 RUNX3 SMARCA5 CYP1B1 CYP1B1-AS1 CDC42EP3 LOC100419680 RMDN2-AS1 RMDN2
GH02I038187 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +114.9 114907 2.2 MAX REST RAD21 FOXA1 NR2F2 YY1 JUND ATF3 HNF4A ZBTB33 CYP1B1 RNU6-951P CYP1B1-AS1 ENSG00000273006 GC02M038149 LOC102723739 GC02M038108
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CYP1B1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CYP1B1-AS1 Gene

Genomic Locations for CYP1B1-AS1 Gene
chr2:38,073,447-38,231,651
(GRCh38/hg38)
Size:
158,205 bases
Orientation:
Plus strand
chr2:38,302,791-38,408,997
(GRCh37/hg19)

Genomic View for CYP1B1-AS1 Gene

Genes around CYP1B1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYP1B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYP1B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYP1B1-AS1 Gene

Proteins for CYP1B1-AS1 Gene

Post-translational modifications for CYP1B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYP1B1-AS1 Gene

Domains & Families for CYP1B1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYP1B1-AS1 Gene

Function for CYP1B1-AS1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYP1B1-AS1 Gene

Localization for CYP1B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYP1B1-AS1 Gene

Pathways & Interactions for CYP1B1-AS1 Gene

SuperPathways for CYP1B1-AS1 Gene

No Data Available

Interacting Proteins for CYP1B1-AS1 Gene

Gene Ontology (GO) - Biological Process for CYP1B1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYP1B1-AS1 Gene

Drugs & Compounds for CYP1B1-AS1 Gene

No Compound Related Data Available

Transcripts for CYP1B1-AS1 Gene

mRNA/cDNA for CYP1B1-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(35) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CYP1B1-AS1 Gene

CYP1B1 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYP1B1-AS1 Gene

No ASD Table

Relevant External Links for CYP1B1-AS1 Gene

GeneLoc Exon Structure for
CYP1B1-AS1
ECgene alternative splicing isoforms for
CYP1B1-AS1

Expression for CYP1B1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYP1B1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CYP1B1-AS1 Gene

This gene is overexpressed in Whole Blood (x9.2).

SOURCE GeneReport for Unigene cluster for CYP1B1-AS1 Gene:

Hs.353894
genes like me logo Genes that share expression patterns with CYP1B1-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYP1B1-AS1 Gene

Orthologs for CYP1B1-AS1 Gene

Evolution for CYP1B1-AS1 Gene

ENSEMBL:
Gene Tree for CYP1B1-AS1 (if available)
TreeFam:
Gene Tree for CYP1B1-AS1 (if available)

No data available for Orthologs for CYP1B1-AS1 Gene

Paralogs for CYP1B1-AS1 Gene

No data available for Paralogs for CYP1B1-AS1 Gene

Variants for CYP1B1-AS1 Gene

Sequence variations from dbSNP and Humsavar for CYP1B1-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000084234 -- 38,153,635(+) T/C intron_variant
rs1000130617 -- 38,173,717(+) A/G intron_variant
rs1000136450 -- 38,135,514(+) G/A intron_variant
rs1000150297 -- 38,154,731(+) T/A intron_variant
rs1000188897 -- 38,137,847(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CYP1B1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6788n54 CNV loss 21841781
esv21528 CNV loss 19812545
esv2245622 CNV deletion 18987734
esv2659660 CNV deletion 23128226
esv2719944 CNV deletion 23290073
nsv2689 CNV insertion 18451855
nsv581476 CNV loss 21841781
nsv581477 CNV loss 21841781
nsv9646 CNV loss 18304495

Additional Variant Information for CYP1B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYP1B1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CYP1B1-AS1 Gene

Disorders for CYP1B1-AS1 Gene

Additional Disease Information for CYP1B1-AS1

No disorders were found for CYP1B1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYP1B1-AS1 Gene

Publications for CYP1B1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58

Products for CYP1B1-AS1 Gene

Sources for CYP1B1-AS1 Gene

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