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Aliases for CYMP-AS1 Gene

Subcategory (RNA class) for CYMP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CYMP-AS1 Gene

  • CYMP Antisense RNA 1 2 3 5

External Ids for CYMP-AS1 Gene

Summaries for CYMP-AS1 Gene

GeneCards Summary for CYMP-AS1 Gene

CYMP-AS1 (CYMP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CYMP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYMP-AS1 Gene

Genomics for CYMP-AS1 Gene

GeneHancer (GH) Regulatory Elements for CYMP-AS1 Gene

Promoters and enhancers for CYMP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J110491 Enhancer 0.5 ENCODE 650.7 -1.0 -955 0 ZFHX2 ATF4 ATF1 CEBPB CEBPG EGR2 CYMP-AS1 PROK1 KCNA10 KCNC4 LINC02586 CYMP GC01P110517
GH01J110496 Enhancer 0.7 ENCODE 0.4 -5.9 -5926 0.1 CTCF FOXA2 ZBTB21 TEAD4 RAD21 NCOA2 CC2D1A FOXK2 ZBTB48 SCRT2 PROK1 KCNA10 UBL4B ENSG00000200536 CYMP-AS1 GC01P110517
GH01J110507 Enhancer 0.6 Ensembl ENCODE 0.4 -18.0 -17966 1.2 EED EBF1 RUNX3 LAMTOR5-AS1 GC01P110517 CYMP-AS1
GH01J110515 Enhancer 0.4 FANTOM5 0.3 -25.0 -25043 0.3 ZNF10 ZNF416 GC01P110517 STRIP1 CYMP-AS1
GH01J110510 Enhancer 0.3 FANTOM5 0.3 -20.8 -20760 0.3 ZSCAN5C ENSG00000235526 LOC105378897 GC01P110517 CYMP-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CYMP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CYMP-AS1 Gene

Genomic Locations for CYMP-AS1 Gene
chr1:110,487,680-110,490,258
(GRCh38/hg38)
Size:
2,579 bases
Orientation:
Minus strand
chr1:111,030,302-111,032,880
(GRCh37/hg19)

Genomic View for CYMP-AS1 Gene

Genes around CYMP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYMP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYMP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYMP-AS1 Gene

Function for CYMP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYMP-AS1 Gene

Localization for CYMP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYMP-AS1 Gene

Pathways & Interactions for CYMP-AS1 Gene

SuperPathways for CYMP-AS1 Gene

No Data Available

Interacting Proteins for CYMP-AS1 Gene

Gene Ontology (GO) - Biological Process for CYMP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYMP-AS1 Gene

Drugs & Compounds for CYMP-AS1 Gene

No Compound Related Data Available

Transcripts for CYMP-AS1 Gene

mRNA/cDNA for CYMP-AS1 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CYMP-AS1 Gene

No ASD Table

Relevant External Links for CYMP-AS1 Gene

GeneLoc Exon Structure for
CYMP-AS1
ECgene alternative splicing isoforms for
CYMP-AS1

Expression for CYMP-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYMP-AS1 Gene

Orthologs for CYMP-AS1 Gene

Evolution for CYMP-AS1 Gene

ENSEMBL:
Gene Tree for CYMP-AS1 (if available)
TreeFam:
Gene Tree for CYMP-AS1 (if available)

No data available for Orthologs for CYMP-AS1 Gene

Paralogs for CYMP-AS1 Gene

No data available for Paralogs for CYMP-AS1 Gene

Variants for CYMP-AS1 Gene

Sequence variations from dbSNP and Humsavar for CYMP-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000731284 -- 110,487,379(-) G/A downstream_transcript_variant
rs1000928370 -- 110,490,993(-) T/C upstream_transcript_variant
rs1001532666 -- 110,492,037(-) G/A upstream_transcript_variant
rs1001638504 -- 110,488,327(-) G/A non_coding_transcript_variant
rs1001639905 -- 110,489,311(-) A/G non_coding_transcript_variant

Additional Variant Information for CYMP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYMP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYMP-AS1 Gene

Disorders for CYMP-AS1 Gene

Additional Disease Information for CYMP-AS1

No disorders were found for CYMP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYMP-AS1 Gene

Publications for CYMP-AS1 Gene

  1. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy RB … Poland GA (Human genetics 2012) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CYMP-AS1 Gene

Sources for CYMP-AS1 Gene

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