Aliases for CYMP-AS1 Gene

Subcategory (RNA class) for CYMP-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for CYMP-AS1 Gene

  • CYMP Antisense RNA 1 2 3 5
  • CYMP-AS1 2 5 165
  • NONHSAG002384.2 91

External Ids for CYMP-AS1 Gene

Summaries for CYMP-AS1 Gene

GeneCards Summary for CYMP-AS1 Gene

CYMP-AS1 (CYMP Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CYMP-AS1 include Astrocytoma.

Additional gene information for CYMP-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CYMP-AS1 Gene

Genomics for CYMP-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CYMP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J110491 Enhancer 0.5 ENCODE 600.7 -1.0 -955 0 CEBPB ZFHX2 ATF4 CEBPG EGR2 ATF1 CYMP-AS1 MN296838 PROK1 KCNA10 KCNC4 LINC02586 CYMP
GH01J110482 Enhancer 0.3 Ensembl 0.4 +7.5 7457 1.6 USF2 PROK1 KCNA10 CYMP CYMP-AS1 ENSG00000283999
GH01J110487 Enhancer 0.2 Ensembl 0.7 +2.6 2557 0.2 PROK1 KCNA10 UBL4B CYMP-AS1 CYMP ENSG00000283999
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CYMP-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CYMP-AS1 Gene

Genomic Locations for CYMP-AS1 Gene
chr1:110,487,680-110,490,258
(GRCh38/hg38)
Size:
2,579 bases
Orientation:
Minus strand
chr1:111,030,302-111,032,880
(GRCh37/hg19)
Size:
2,579 bases
Orientation:
Minus strand

Genomic View for CYMP-AS1 Gene

Genes around CYMP-AS1 on UCSC Golden Path with GeneCards custom track
CYMP-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CYMP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYMP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYMP-AS1 Gene

Proteins for CYMP-AS1 Gene

Post-translational modifications for CYMP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYMP-AS1 Gene

Domains & Families for CYMP-AS1 Gene

Gene Families for CYMP-AS1 Gene

genes like me logo Genes that share domains with CYMP-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CYMP-AS1 Gene

Function for CYMP-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYMP-AS1 Gene

Localization for CYMP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYMP-AS1 Gene

Pathways & Interactions for CYMP-AS1 Gene

PathCards logo

SuperPathways for CYMP-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CYMP-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CYMP-AS1 Gene

Drugs & Compounds for CYMP-AS1 Gene

No Compound Related Data Available

Transcripts for CYMP-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CYMP-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D2E9_9606 lncRNA 2351 5

HGNC: 52509,

RefSeq: NR_108042,

Ensembl: ENST00000457402 (view in UCSC) ,

LNCipedia: CYMP-AS1:3,

NONCODE: NONHSAT005138.2,

CYMP-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CYMP-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CYMP-AS1 Gene

No ASD Table

Relevant External Links for CYMP-AS1 Gene

GeneLoc Exon Structure for
CYMP-AS1

Expression for CYMP-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CYMP-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYMP-AS1 Gene

Orthologs for CYMP-AS1 Gene

Evolution for CYMP-AS1 Gene

ENSEMBL:
Gene Tree for CYMP-AS1 (if available)
TreeFam:
Gene Tree for CYMP-AS1 (if available)

No data available for Orthologs for CYMP-AS1 Gene

Paralogs for CYMP-AS1 Gene

No data available for Paralogs for CYMP-AS1 Gene

Variants for CYMP-AS1 Gene

Additional dbSNP identifiers (rs#s) for CYMP-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CYMP-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1006346 CNV gain 25217958
nsv519826 CNV loss 19592680

Additional Variant Information for CYMP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYMP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CYMP-AS1 Gene

Disorders for CYMP-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CYMP-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CYMP-AS1

genes like me logo Genes that share disorders with CYMP-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CYMP-AS1 Gene

Publications for CYMP-AS1 Gene

  1. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy RB … Poland GA (Human genetics 2012) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for CYMP-AS1 Gene

Products for CYMP-AS1 Gene

Sources for CYMP-AS1 Gene