Aliases for CYMP Gene

Aliases for CYMP Gene

  • Chymosin, Pseudogene 2 3
  • Rennin Pseudogene 2 3
  • Chymosin Pseudogene 5

External Ids for CYMP Gene

Previous GeneCards Identifiers for CYMP Gene

  • GC01U990033
  • GC01P110825
  • GC01P111023
  • GC01P108895

Summaries for CYMP Gene

GeneCards Summary for CYMP Gene

CYMP (Chymosin, Pseudogene) is a Pseudogene.

Additional gene information for CYMP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CYMP Gene

Genomics for CYMP Gene

GeneHancer (GH) Regulatory Elements for CYMP Gene

Promoters and enhancers for CYMP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J110476 Enhancer 1 Ensembl ENCODE 7.6 -3.4 -3351 4 CTCF SMARCE1 ZNF133 TEAD4 ZKSCAN8 MAFK CBFA2T2 SP7 ZSCAN21 PRDM1 ENSG00000258634 ENSG00000273373 STRIP1 PROK1 KCNA10 KCNC4 LINC02586 UBE2FP3 ENSG00000260948 CYMP
GH01J110463 Enhancer 0.8 Ensembl ENCODE 4.6 -16.0 -15952 2.8 FOSL2 GLIS2 ZIC2 CEBPB ZNF316 JUND FOS POLR2A CEBPG GLIS1 HSALNG0005981 CYMP L13713-011
GH01J110466 Enhancer 0.2 Ensembl 4.9 -14.1 -14072 0.6 HSALNG0005981 CYMP ENSG00000282887
GH01J110491 Enhancer 0.4 ENCODE 0.4 +10.5 10461 0 ATF1 ZFHX2 CEBPB CEBPG CYMP-AS1 PROK1 KCNA10 KCNC4 LINC02586 CYMP lnc-PROK1-4
GH01J110474 Enhancer 0.3 Ensembl 0.4 -6.3 -6251 0.6 ZNF316 ZFHX2 ENSG00000283999 ENSG00000282887 LOC105378898 LOC105378899 lnc-KCNA10-2 PROK1 KCNC4 LINC02586 KCNA10 CYMP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CYMP on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CYMP gene promoter:
  • AREB6
  • C/EBPbeta
  • CP2
  • FOXF2
  • FOXJ2 (long isoform)
  • MRF-2
  • p53
  • Pax-4a
  • Zic1
  • ZID

Genomic Locations for CYMP Gene

Genomic Locations for CYMP Gene
chr1:110,480,752-110,491,277
(GRCh38/hg38)
Size:
10,526 bases
Orientation:
Plus strand
chr1:111,023,374-111,033,899
(GRCh37/hg19)
Size:
10,526 bases
Orientation:
Plus strand

Genomic View for CYMP Gene

Genes around CYMP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYMP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYMP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYMP Gene

Proteins for CYMP Gene

No data available for DME Specific Peptides for CYMP Gene

Domains & Families for CYMP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CYMP Gene

Function for CYMP Gene

Molecular function for CYMP Gene

GENATLAS Biochemistry:
chymosin,pseudogene

Phenotypes From GWAS Catalog for CYMP Gene

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYMP Gene

Localization for CYMP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYMP Gene

Pathways & Interactions for CYMP Gene

PathCards logo

SuperPathways for CYMP Gene

No Data Available

Gene Ontology (GO) - Biological Process for CYMP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYMP Gene

Drugs & Compounds for CYMP Gene

No Compound Related Data Available

Transcripts for CYMP Gene

mRNA/cDNA for CYMP Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYMP Gene

No ASD Table

Relevant External Links for CYMP Gene

GeneLoc Exon Structure for
CYMP
ECgene alternative splicing isoforms for
CYMP

Expression for CYMP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYMP Gene

mRNA differential expression in normal tissues according to GTEx for CYMP Gene

This gene is overexpressed in Testis (x12.1) and Stomach (x12.0).

NURSA nuclear receptor signaling pathways regulating expression of CYMP Gene:

CYMP

SOURCE GeneReport for Unigene cluster for CYMP Gene:

Hs.532720
genes like me logo Genes that share expression patterns with CYMP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYMP Gene

Orthologs for CYMP Gene

Evolution for CYMP Gene

ENSEMBL:
Gene Tree for CYMP (if available)
TreeFam:
Gene Tree for CYMP (if available)

No data available for Orthologs for CYMP Gene

Paralogs for CYMP Gene

No data available for Paralogs for CYMP Gene

Variants for CYMP Gene

Sequence variations from dbSNP and Humsavar for CYMP Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000679027 -- 110,481,479(+) G/A intron_variant
rs1000731284 -- 110,487,379(+) G/A intron_variant
rs1000794952 -- 110,482,278(+) A/G intron_variant
rs1000928370 -- 110,490,993(+) T/C intron_variant
rs1001029863 -- 110,481,213(+) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CYMP Gene

Variant ID Type Subtype PubMed ID
esv3587166 CNV loss 21293372
nsv1006346 CNV gain 25217958
nsv519826 CNV loss 19592680

Additional Variant Information for CYMP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYMP

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CYMP Gene

Disorders for CYMP Gene

Additional Disease Information for CYMP

No disorders were found for CYMP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYMP Gene

Publications for CYMP Gene

  1. Assignment of human prochymosin pseudogene to chromosome 1. (PMID: 2071156) Kolmer M … Jänne J (Genomics 1991) 2 3 56
  2. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy RB … Poland GA (Human genetics 2012) 3 56
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  4. Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data. (PMID: 17052657) Fung HC … Singleton A (The Lancet. Neurology 2006) 43 56
  5. Structure and chromosomal localization of the human prochymosin pseudogene. (PMID: 1812698) Ord T … Saarma M (Advances in experimental medicine and biology 1991) 3 56

Products for CYMP Gene

Sources for CYMP Gene