Aliases for CYCSP55 Gene

Aliases for CYCSP55 Gene

  • CYCS Pseudogene 55 2 3 5
  • Cytochrome C, Somatic-Like 1 (Pseudogene) 2 3
  • Cytochrome C, Somatic Pseudogene 55 2 3
  • BA513I15.3 2 3
  • HCP15 2 3
  • Cytochrome C, Somatic-Like 1 2
  • CYCSP55 5
  • CYCSL1 3
  • HS11 3

External Ids for CYCSP55 Gene

Previous HGNC Symbols for CYCSP55 Gene

  • CYCSL1

Previous GeneCards Identifiers for CYCSP55 Gene

  • GC06P034191
  • GC06P034193
  • GC06P034444
  • GC06P035767
  • GC06P036297
  • GC06P037283
  • GC06P034919
  • GC06P035502
  • GC06P042757
  • GC06P043091
  • GC06P043309
  • GC06P046012
  • GC06P037623
  • GC06P038312
  • GC06P038952
  • GC06P039540
  • GC06P040099
  • GC06P041162
  • GC06P041844
  • GC06P042492
  • GC06P047418
  • GC06P049471

Summaries for CYCSP55 Gene

GeneCards Summary for CYCSP55 Gene

CYCSP55 (CYCS Pseudogene 55) is a Pseudogene.

Additional gene information for CYCSP55 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CYCSP55 Gene

Genomics for CYCSP55 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CYCSP55 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J034218 Promoter 0.3 Ensembl 250.7 +0.7 729 0.2 CYCSP55 RF00017-4956 lnc-HMGA1-4 HMGA1 RF00017-4955 GRM4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CYCSP55 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CYCSP55 Gene

Latest Assembly
chr6:34,219,372-34,220,937
(GRCh38/hg38)
Size:
1,566 bases
Orientation:
Plus strand

Previous Assembly
chr6:34,187,149-34,188,714
(GRCh37/hg19 by Entrez Gene)
Size:
1,566 bases
Orientation:
Plus strand

chr6:34,187,216-34,187,843
(GRCh37/hg19 by Ensembl)
Size:
628 bases
Orientation:
Plus strand

Genomic View for CYCSP55 Gene

Genes around CYCSP55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYCSP55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYCSP55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYCSP55 Gene

Proteins for CYCSP55 Gene

Post-translational modifications for CYCSP55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYCSP55 Gene

Domains & Families for CYCSP55 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CYCSP55 Gene

Function for CYCSP55 Gene

Phenotypes From GWAS Catalog for CYCSP55 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYCSP55 Gene

Localization for CYCSP55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYCSP55 Gene

Pathways & Interactions for CYCSP55 Gene

PathCards logo

SuperPathways for CYCSP55 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CYCSP55 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CYCSP55 Gene

Drugs & Compounds for CYCSP55 Gene

No Compound Related Data Available

Transcripts for CYCSP55 Gene

mRNA/cDNA for CYCSP55 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CYCSP55 Gene

No ASD Table

Relevant External Links for CYCSP55 Gene

GeneLoc Exon Structure for
CYCSP55

Expression for CYCSP55 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CYCSP55 Gene

genes like me logo Genes that share expression patterns with CYCSP55: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYCSP55 Gene

Orthologs for CYCSP55 Gene

Evolution for CYCSP55 Gene

ENSEMBL:
Gene Tree for CYCSP55 (if available)
TreeFam:
Gene Tree for CYCSP55 (if available)
Alliance of Genome Resources:
Additional Orthologs for CYCSP55

No data available for Orthologs for CYCSP55 Gene

Paralogs for CYCSP55 Gene

No data available for Paralogs for CYCSP55 Gene

Variants for CYCSP55 Gene

Additional Variant Information for CYCSP55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYCSP55
Leiden Open Variation Database (LOVD)
CYCSP55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYCSP55 Gene

Disorders for CYCSP55 Gene

No disorders were found for CYCSP55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CYCSP55 Gene

Publications for CYCSP55 Gene

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. (PMID: 12909341) Zhang Z … Gerstein M (Gene 2003) 2 3
  2. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. (PMID: 2849112) Evans MJ … Scarpulla RC (Proceedings of the National Academy of Sciences of the United States of America 1988) 3

Products for CYCSP55 Gene

Sources for CYCSP55 Gene