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Aliases for CYCSP52 Gene

Subcategory (RNA class) for CYCSP52 Gene

antisense

Aliases for CYCSP52 Gene

  • Cytochrome C, Somatic Pseudogene 52 2 3 5
  • Somatic Cytochrome C (HC6) Processed Pseudogene 3
  • HCP2 3
  • HC6 3

External Ids for CYCSP52 Gene

ORGUL Members for CYCSP52 Gene

Previous GeneCards Identifiers for CYCSP52 Gene

  • GC01P153912
  • GC01P155364
  • GC01P128456

Summaries for CYCSP52 Gene

GeneCards Summary for CYCSP52 Gene

CYCSP52 (Cytochrome C, Somatic Pseudogene 52) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for CYCSP52 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYCSP52 Gene

Genomics for CYCSP52 Gene

GeneHancer (GH) Regulatory Elements for CYCSP52 Gene

Promoters and enhancers for CYCSP52 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I157131 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.2 7198 8.9 HDGF PKNOX1 FOXA2 ARNT ARID4B NEUROD1 SIN3A DMAP1 POLR2B ZNF766 ETV3 RRNAD1 ETV3L CCT3 PRCC CYCSP52
GH01I157105 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 -21.7 -21740 1.8 HDGF SMAD1 BMI1 BATF IRF4 ZNF207 ATF7 ETV6 FOS BCLAF1 ETV3 BGLAP ARHGEF11 RRNAD1 ETV3L CYCSP52
GH01I157099 Promoter 0.8 EPDnew 0.3 -28.5 -28534 0.1 HDGF ZNF366 IKZF1 NBN EZH2 ETV3L CYCSP52
GH01I157112 Enhancer 0.5 FANTOM5 Ensembl 0.4 -15.2 -15161 0.8 ETV3 RRNAD1 ETV3L CYCSP52
GH01I157113 Enhancer 0.2 ENCODE 0.4 -14.5 -14538 0.2 CYCSP52 ETV3L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CYCSP52 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CYCSP52 gene promoter:

Genomic Locations for CYCSP52 Gene

Genomic Locations for CYCSP52 Gene
chr1:157,128,362-157,128,671
(GRCh38/hg38)
Size:
310 bases
Orientation:
Plus strand
chr1:157,098,154-157,098,463
(GRCh37/hg19)

Genomic View for CYCSP52 Gene

Genes around CYCSP52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYCSP52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYCSP52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYCSP52 Gene

Proteins for CYCSP52 Gene

Post-translational modifications for CYCSP52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYCSP52 Gene

Domains & Families for CYCSP52 Gene

Suggested Antigen Peptide Sequences for CYCSP52 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for CYCSP52 Gene

Function for CYCSP52 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYCSP52 Gene

Localization for CYCSP52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYCSP52 Gene

Pathways & Interactions for CYCSP52 Gene

SuperPathways for CYCSP52 Gene

No Data Available

Interacting Proteins for CYCSP52 Gene

Gene Ontology (GO) - Biological Process for CYCSP52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYCSP52 Gene

Drugs & Compounds for CYCSP52 Gene

No Compound Related Data Available

Transcripts for CYCSP52 Gene

mRNA/cDNA for CYCSP52 Gene

(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CYCSP52 Gene

Cytochrome c, somatic pseudogene 52:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYCSP52 Gene

No ASD Table

Relevant External Links for CYCSP52 Gene

GeneLoc Exon Structure for
CYCSP52
ECgene alternative splicing isoforms for
CYCSP52

Expression for CYCSP52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYCSP52 Gene

NURSA nuclear receptor signaling pathways regulating expression of CYCSP52 Gene:

CYCSP52

SOURCE GeneReport for Unigene cluster for CYCSP52 Gene:

Hs.491808
genes like me logo Genes that share expression patterns with CYCSP52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYCSP52 Gene

Orthologs for CYCSP52 Gene

Evolution for CYCSP52 Gene

ENSEMBL:
Gene Tree for CYCSP52 (if available)
TreeFam:
Gene Tree for CYCSP52 (if available)

No data available for Orthologs for CYCSP52 Gene

Paralogs for CYCSP52 Gene

No data available for Paralogs for CYCSP52 Gene

Variants for CYCSP52 Gene

Sequence variations from dbSNP and Humsavar for CYCSP52 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001192805 -- 157,126,418(+) T/C upstream_transcript_variant
rs1001679604 -- 157,127,543(+) T/C upstream_transcript_variant
rs1001981786 -- 157,128,391(+) T/C non_coding_transcript_variant
rs1003285585 -- 157,126,560(+) T/A upstream_transcript_variant
rs1005934073 -- 157,127,116(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CYCSP52 Gene

Variant ID Type Subtype PubMed ID
nsv3121 CNV deletion 18451855
nsv946427 CNV duplication 23825009

Additional Variant Information for CYCSP52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYCSP52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CYCSP52 Gene

Disorders for CYCSP52 Gene

Additional Disease Information for CYCSP52

No disorders were found for CYCSP52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYCSP52 Gene

Publications for CYCSP52 Gene

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. (PMID: 12909341) Zhang Z … Gerstein M (Gene 2003) 2 3 58
  2. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. (PMID: 2849112) Evans MJ … Scarpulla RC (Proceedings of the National Academy of Sciences of the United States of America 1988) 2 3 58
  3. Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study. (PMID: 22044751) Foster MC … Fox CS (BMC medical genetics 2011) 44 58
  4. Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study. (PMID: 18951430) Anney RJ … Gill M (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2008) 44 58
  5. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58

Products for CYCSP52 Gene

Sources for CYCSP52 Gene

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