Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CYCSP42 Gene

Subcategory (RNA class) for CYCSP42 Gene

lncRNA

Aliases for CYCSP42 Gene

  • Cytochrome C, Somatic Pseudogene 42 2 3 5
  • Cytochrome C-1-Like Pseudogene 5 2 3
  • Cytochrome C Pseudogene 3
  • CYC1LP5 3
  • HCP42 3

External Ids for CYCSP42 Gene

ORGUL Members for CYCSP42 Gene

Previous HGNC Symbols for CYCSP42 Gene

  • CYC1LP5

Previous GeneCards Identifiers for CYCSP42 Gene

  • GC21M015785
  • GC21M016863
  • GC21M002242

Summaries for CYCSP42 Gene

GeneCards Summary for CYCSP42 Gene

CYCSP42 (Cytochrome C, Somatic Pseudogene 42) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for CYCSP42 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYCSP42 Gene

Genomics for CYCSP42 Gene

GeneHancer (GH) Regulatory Elements for CYCSP42 Gene

Promoters and enhancers for CYCSP42 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J015483 Enhancer 1.1 Ensembl ENCODE 0.4 +7.5 7466 0.2 ELF3 ARID4B IRF4 ZNF48 RAD21 RARA CHAMP1 ZNF335 ARID2 ZNF143 CYCSP42 GC21P015441 LOC101927745
GH21J015454 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +35.1 35054 2.1 ELF3 ARID4B ZNF48 ZSCAN9 RAD21 RARA YY1 ZNF614 CREM HMG20B LOC101927745 GC21P015441 CYCSP42
GH21J015439 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.2 +47.5 47532 7.1 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ETS1 YY1 SLC30A9 NRIP1 LOC101927745 ENSG00000236471 GC21P015441 CYCSP42
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CYCSP42 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CYCSP42 Gene

Genomic Locations for CYCSP42 Gene
chr21:15,490,524-15,490,782
(GRCh38/hg38)
Size:
259 bases
Orientation:
Minus strand
chr21:16,862,843-16,863,101
(GRCh37/hg19)

Genomic View for CYCSP42 Gene

Genes around CYCSP42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYCSP42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYCSP42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYCSP42 Gene

Function for CYCSP42 Gene

Phenotypes From GWAS Catalog for CYCSP42 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYCSP42 Gene

Localization for CYCSP42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYCSP42 Gene

Pathways & Interactions for CYCSP42 Gene

SuperPathways for CYCSP42 Gene

No Data Available

Interacting Proteins for CYCSP42 Gene

Gene Ontology (GO) - Biological Process for CYCSP42 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYCSP42 Gene

Drugs & Compounds for CYCSP42 Gene

No Compound Related Data Available

Transcripts for CYCSP42 Gene

mRNA/cDNA for CYCSP42 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYCSP42 Gene

No ASD Table

Relevant External Links for CYCSP42 Gene

GeneLoc Exon Structure for
CYCSP42
ECgene alternative splicing isoforms for
CYCSP42

Expression for CYCSP42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYCSP42 Gene

NURSA nuclear receptor signaling pathways regulating expression of CYCSP42 Gene:

CYCSP42
genes like me logo Genes that share expression patterns with CYCSP42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYCSP42 Gene

Orthologs for CYCSP42 Gene

Evolution for CYCSP42 Gene

ENSEMBL:
Gene Tree for CYCSP42 (if available)
TreeFam:
Gene Tree for CYCSP42 (if available)

No data available for Orthologs for CYCSP42 Gene

Paralogs for CYCSP42 Gene

No data available for Paralogs for CYCSP42 Gene

Variants for CYCSP42 Gene

Additional Variant Information for CYCSP42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYCSP42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYCSP42 Gene

Disorders for CYCSP42 Gene

Additional Disease Information for CYCSP42

Genetic Association Database
(GAD)

No disorders were found for CYCSP42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYCSP42 Gene

Publications for CYCSP42 Gene

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. (PMID: 12909341) Zhang Z … Gerstein M (Gene 2003) 2 3 58
  2. Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease. (PMID: 21738487) Do CB … Eriksson N (PLoS genetics 2011) 44 58
  3. Genome-wide association study of panic disorder in the Japanese population. (PMID: 19165232) Otowa T … Okazaki Y (Journal of human genetics 2009) 44 58
  4. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 44 58
  5. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 44 58

Products for CYCSP42 Gene

Sources for CYCSP42 Gene

Content
Loading form....