Aliases for CYCSP40 Gene

Aliases for CYCSP40 Gene

  • CYCS Pseudogene 40 2 3 5
  • Cytochrome C, Somatic Pseudogene 40 2 3
  • HCP40 2 3
  • HC7 2 3
  • CYCSP40 5

External Ids for CYCSP40 Gene

Previous GeneCards Identifiers for CYCSP40 Gene

  • GC17M072708
  • GC17M075195

Summaries for CYCSP40 Gene

GeneCards Summary for CYCSP40 Gene

CYCSP40 (CYCS Pseudogene 40) is a Pseudogene.

Additional gene information for CYCSP40 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CYCSP40 Gene

Genomics for CYCSP40 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CYCSP40 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J077200 Enhancer 0.4 ENCODE dbSUPER 600.7 -1.2 -1227 1.5 CTCF CYCSP40 lnc-SRSF2-7 RNU4-47P SEPTIN9 HSALNG0118911 SEC14L1
GH17J077204 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -8.0 -8035 5.8 CREB1 GATAD2A TFE3 ZIC2 RXRB IRF2 SP1 GABPA CEBPA KMT2B SEC14L1 SNHG16 CYCSP40 HSALNG0118911 lnc-SRSF2-7 SEPTIN9
GH17J077211 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -13.2 -13180 2.6 SP1 BACH1 STAT3 RELA TCF12 IKZF2 RCOR1 TRIM22 PKNOX1 EED SEC14L1 HSALNG0118911 CYCSP40 lnc-SRSF2-7 SEPTIN9
GH17J077181 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +16.9 16872 1.9 ETV6 EED EGR1 NBN ZFHX2 SPI1 PRDM6 MTA2 EGR2 IKZF1 RNU4-47P SEPTIN9 CYCSP40 lnc-SRSF2-7 piR-31080-002 SEC14L1
GH17J077187 Enhancer 0.9 ENCODE dbSUPER 0.4 +10.9 10867 1.9 SP1 STAT3 RELA RCOR1 YY1 PKNOX1 EED PAX8 RELB RUNX3 RNU4-47P SEC14L1 CYCSP40 lnc-SRSF2-7 piR-31080-002 SEPTIN9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CYCSP40 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CYCSP40 Gene

Genomic Locations for CYCSP40 Gene
chr17:77,198,950-77,199,543
(GRCh38/hg38)
Size:
594 bases
Orientation:
Minus strand
chr17:75,195,032-75,195,625
(GRCh37/hg19)
Size:
594 bases
Orientation:
Minus strand

Genomic View for CYCSP40 Gene

Genes around CYCSP40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYCSP40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYCSP40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYCSP40 Gene

Proteins for CYCSP40 Gene

Post-translational modifications for CYCSP40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYCSP40 Gene

Domains & Families for CYCSP40 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CYCSP40 Gene

Function for CYCSP40 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYCSP40 Gene

Localization for CYCSP40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYCSP40 Gene

Pathways & Interactions for CYCSP40 Gene

PathCards logo

SuperPathways for CYCSP40 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CYCSP40 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CYCSP40 Gene

Drugs & Compounds for CYCSP40 Gene

No Compound Related Data Available

Transcripts for CYCSP40 Gene

mRNA/cDNA for CYCSP40 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CYCSP40 Gene

No ASD Table

Relevant External Links for CYCSP40 Gene

GeneLoc Exon Structure for
CYCSP40

Expression for CYCSP40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CYCSP40 Gene

mRNA differential expression in normal tissues according to GTEx for CYCSP40 Gene

This gene is overexpressed in Whole Blood (x7.6).
genes like me logo Genes that share expression patterns with CYCSP40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYCSP40 Gene

Orthologs for CYCSP40 Gene

Evolution for CYCSP40 Gene

ENSEMBL:
Gene Tree for CYCSP40 (if available)
TreeFam:
Gene Tree for CYCSP40 (if available)

No data available for Orthologs for CYCSP40 Gene

Paralogs for CYCSP40 Gene

No data available for Paralogs for CYCSP40 Gene

Variants for CYCSP40 Gene

Additional Variant Information for CYCSP40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYCSP40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYCSP40 Gene

Disorders for CYCSP40 Gene

Additional Disease Information for CYCSP40

Genetic Association Database
(GAD)

No disorders were found for CYCSP40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYCSP40 Gene

Publications for CYCSP40 Gene

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. (PMID: 12909341) Zhang Z … Gerstein M (Gene 2003) 2 3
  2. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. (PMID: 2849112) Evans MJ … Scarpulla RC (Proceedings of the National Academy of Sciences of the United States of America 1988) 2 3
  3. Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data. (PMID: 17362836) Schymick JC … Traynor BJ (The Lancet. Neurology 2007) 41

Products for CYCSP40 Gene

Sources for CYCSP40 Gene