Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CYCSP38 Gene

Subcategory (RNA class) for CYCSP38 Gene

antisense

Aliases for CYCSP38 Gene

  • Cytochrome C, Somatic Pseudogene 38 2 3 5
  • HCP38 3
  • HC2 3

External Ids for CYCSP38 Gene

ORGUL Members for CYCSP38 Gene

Previous GeneCards Identifiers for CYCSP38 Gene

  • GC15P058638
  • GC15P060850

Summaries for CYCSP38 Gene

GeneCards Summary for CYCSP38 Gene

CYCSP38 (Cytochrome C, Somatic Pseudogene 38) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for CYCSP38 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYCSP38 Gene

Genomics for CYCSP38 Gene

GeneHancer (GH) Regulatory Elements for CYCSP38 Gene

Promoters and enhancers for CYCSP38 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I060555 Enhancer 0.7 ENCODE dbSUPER 550.8 -2.0 -1968 0.4 RXRA HNF4G HNF4A BATF CYCSP38 PIR43643 RORA-AS1 RORA
GH15I060556 Enhancer 0.6 ENCODE dbSUPER 550.8 -0.2 -172 2 NR2F1 RUNX3 CYCSP38 PIR43643 RORA-AS1 RORA
GH15I060538 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -11.7 -11659 15.5 HDGF PKNOX1 RB1 BMI1 BATF IRF4 RAD21 ZNF143 ATF7 ETV6 RORA ICE2 PIR43643 CYCSP38 ENSG00000259274 RORA-AS1
GH15I060562 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 +5.6 5622 3.2 EBF1 BMI1 IRF4 RELA ZNF121 IKZF2 RUNX3 MAFK NR2F1 CBFB GC15P060563 RORA ANXA2 CYCSP38 RORA-AS1
GH15I060554 Enhancer 0.3 dbSUPER 0.8 -3.1 -3094 1.1 SP7 ICE2 CYCSP38 PIR43643 RORA-AS1 RORA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CYCSP38 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CYCSP38 Gene

Genomic Locations for CYCSP38 Gene
chr15:60,558,080-60,558,401
(GRCh38/hg38)
Size:
322 bases
Orientation:
Plus strand
chr15:60,850,279-60,850,600
(GRCh37/hg19)

Genomic View for CYCSP38 Gene

Genes around CYCSP38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYCSP38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYCSP38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYCSP38 Gene

Proteins for CYCSP38 Gene

Post-translational modifications for CYCSP38 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYCSP38 Gene

Domains & Families for CYCSP38 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYCSP38 Gene

Function for CYCSP38 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYCSP38 Gene

Localization for CYCSP38 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYCSP38 Gene

Pathways & Interactions for CYCSP38 Gene

SuperPathways for CYCSP38 Gene

No Data Available

Interacting Proteins for CYCSP38 Gene

Gene Ontology (GO) - Biological Process for CYCSP38 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYCSP38 Gene

Drugs & Compounds for CYCSP38 Gene

No Compound Related Data Available

Transcripts for CYCSP38 Gene

mRNA/cDNA for CYCSP38 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYCSP38 Gene

No ASD Table

Relevant External Links for CYCSP38 Gene

GeneLoc Exon Structure for
CYCSP38
ECgene alternative splicing isoforms for
CYCSP38

Expression for CYCSP38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYCSP38 Gene

mRNA differential expression in normal tissues according to GTEx for CYCSP38 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x5.6) and Skin - Not Sun Exposed (Suprapubic) (x5.4).

NURSA nuclear receptor signaling pathways regulating expression of CYCSP38 Gene:

CYCSP38
genes like me logo Genes that share expression patterns with CYCSP38: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYCSP38 Gene

Orthologs for CYCSP38 Gene

Evolution for CYCSP38 Gene

ENSEMBL:
Gene Tree for CYCSP38 (if available)
TreeFam:
Gene Tree for CYCSP38 (if available)

No data available for Orthologs for CYCSP38 Gene

Paralogs for CYCSP38 Gene

No data available for Paralogs for CYCSP38 Gene

Variants for CYCSP38 Gene

Additional Variant Information for CYCSP38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYCSP38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYCSP38 Gene

Disorders for CYCSP38 Gene

Additional Disease Information for CYCSP38

Genetic Association Database
(GAD)

No disorders were found for CYCSP38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CYCSP38 Gene

Publications for CYCSP38 Gene

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. (PMID: 12909341) Zhang Z … Gerstein M (Gene 2003) 2 3 58
  2. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. (PMID: 2849112) Evans MJ … Scarpulla RC (Proceedings of the National Academy of Sciences of the United States of America 1988) 2 3 58
  3. Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2. (PMID: 22451204) Pankratz N … PD GWAS Consortium (Annals of neurology 2012) 44 58
  4. Genome-wide association study identifies five new schizophrenia loci. (PMID: 21926974) Schizophrenia Psychiatric Genome-Wide Association Study (GWAS) Consortium (Nature genetics 2011) 44 58
  5. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 44 58

Products for CYCSP38 Gene

Sources for CYCSP38 Gene

Content
Loading form....