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Aliases for CYCSP20 Gene

Subcategory (RNA class) for CYCSP20 Gene

lncRNA

Aliases for CYCSP20 Gene

  • Cytochrome C, Somatic Pseudogene 20 2 3 5
  • HCP20 3

External Ids for CYCSP20 Gene

ORGUL Members for CYCSP20 Gene

Previous GeneCards Identifiers for CYCSP20 Gene

  • GC07M128352
  • GC07M128544
  • GC07M128759

Summaries for CYCSP20 Gene

GeneCards Summary for CYCSP20 Gene

CYCSP20 (Cytochrome C, Somatic Pseudogene 20) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for CYCSP20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYCSP20 Gene

Genomics for CYCSP20 Gene

GeneHancer (GH) Regulatory Elements for CYCSP20 Gene

Promoters and enhancers for CYCSP20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I129122 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.8 -5.0 -4999 1.6 PKNOX1 BMI1 YBX1 BATF IRF4 ZNF207 ATF7 ETV6 BCLAF1 IKZF2 TNPO3 TSPAN33 ENSG00000242162 TPI1P2 ENSG00000243230 AHCYL2 ATP6V1F NRF1 CYCSP20 LOC407835
GH07I129121 Enhancer 0.9 ENCODE dbSUPER 0.8 -4.1 -4095 0.2 TEAD4 TAL1 KLF5 TCF12 NCOR1 ZNF143 CBFA2T2 TRIM24 EGR2 ZNF687 TSPAN33 TPI1P2 TNPO3 ENSG00000242162 ENSG00000243230 AHCYL2 CYCSP20 LOC407835
GH07I129099 Enhancer 1.1 Ensembl ENCODE 0.4 +15.8 15782 4.4 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 RXRA MIER2 REST TSPAN33 ENSG00000242162 TNPO3 TPI1P2 FLNC-AS1 ATP6V1F ENSG00000243230 AHCYL2 ENSG00000241573 CYCSP20
GH07I129110 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +7.1 7100 1.1 ZNF639 RFX1 BACH1 MAFG ZNF148 ZNF316 POLR2A IKZF1 NFE2 MAFK TNPO3 ENSG00000242162 ENSG00000243230 AHCYL2 CYCSP20 ENSG00000241573
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CYCSP20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CYCSP20 Gene

Genomic Locations for CYCSP20 Gene
chr7:129,117,513-129,117,827
(GRCh38/hg38)
Size:
315 bases
Orientation:
Minus strand
chr7:128,757,567-128,757,881
(GRCh37/hg19)

Genomic View for CYCSP20 Gene

Genes around CYCSP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYCSP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYCSP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYCSP20 Gene

Proteins for CYCSP20 Gene

Post-translational modifications for CYCSP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CYCSP20 Gene

Domains & Families for CYCSP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CYCSP20 Gene

Function for CYCSP20 Gene

Phenotypes From GWAS Catalog for CYCSP20 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CYCSP20 Gene

Localization for CYCSP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CYCSP20 Gene

Pathways & Interactions for CYCSP20 Gene

SuperPathways for CYCSP20 Gene

No Data Available

Interacting Proteins for CYCSP20 Gene

Gene Ontology (GO) - Biological Process for CYCSP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CYCSP20 Gene

Drugs & Compounds for CYCSP20 Gene

No Compound Related Data Available

Transcripts for CYCSP20 Gene

mRNA/cDNA for CYCSP20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYCSP20 Gene

No ASD Table

Relevant External Links for CYCSP20 Gene

GeneLoc Exon Structure for
CYCSP20
ECgene alternative splicing isoforms for
CYCSP20

Expression for CYCSP20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYCSP20 Gene

NURSA nuclear receptor signaling pathways regulating expression of CYCSP20 Gene:

CYCSP20
genes like me logo Genes that share expression patterns with CYCSP20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CYCSP20 Gene

Orthologs for CYCSP20 Gene

Evolution for CYCSP20 Gene

ENSEMBL:
Gene Tree for CYCSP20 (if available)
TreeFam:
Gene Tree for CYCSP20 (if available)

No data available for Orthologs for CYCSP20 Gene

Paralogs for CYCSP20 Gene

No data available for Paralogs for CYCSP20 Gene

Variants for CYCSP20 Gene

Additional Variant Information for CYCSP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYCSP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CYCSP20 Gene

Disorders for CYCSP20 Gene

No disorders were found for CYCSP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CYCSP20 Gene

Publications for CYCSP20 Gene

  1. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. (PMID: 12909341) Zhang Z … Gerstein M (Gene 2003) 2 3 58

Products for CYCSP20 Gene

Sources for CYCSP20 Gene

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