Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CXXC4-AS1 Gene

Subcategory (RNA class) for CXXC4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CXXC4-AS1 Gene

  • CXXC4 Antisense RNA 1 2 3 5

External Ids for CXXC4-AS1 Gene

Summaries for CXXC4-AS1 Gene

GeneCards Summary for CXXC4-AS1 Gene

CXXC4-AS1 (CXXC4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CXXC4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CXXC4-AS1 Gene

Genomics for CXXC4-AS1 Gene

GeneHancer (GH) Regulatory Elements for CXXC4-AS1 Gene

Promoters and enhancers for CXXC4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I104486 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.6 550 9.7 HDGF PKNOX1 FOXA2 SMAD1 SIN3A FEZF1 IRF4 YY1 ZNF213 ZNF207 CXXC4 CXXC4-AS1
GH04I104499 Enhancer 0.6 ENCODE dbSUPER 0.4 +9.9 9918 2.3 RFX1 GABPA GC04P104500 CXXC4-AS1 CXXC4
GH04I104506 Enhancer 0.5 dbSUPER 0.4 +17.2 17212 3.8 PKNOX1 IKZF1 HNF4A IKZF2 RUNX3 SPI1 GC04P104504 GC04P104500 CXXC4-AS1 ENSG00000250670
GH04I104497 Enhancer 0.3 dbSUPER 0.4 +7.5 7514 1.3 IKZF1 GC04P104500 CXXC4 CXXC4-AS1
GH04I104553 Enhancer 0.3 FANTOM5 0.2 +63.0 62989 0.1 ENSG00000250670 GC04P104504 CXXC4-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CXXC4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CXXC4-AS1 Gene

Genomic Locations for CXXC4-AS1 Gene
chr4:104,490,965-104,697,592
(GRCh38/hg38)
Size:
206,628 bases
Orientation:
Plus strand

Genomic View for CXXC4-AS1 Gene

Genes around CXXC4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CXXC4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CXXC4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CXXC4-AS1 Gene

Proteins for CXXC4-AS1 Gene

Post-translational modifications for CXXC4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CXXC4-AS1 Gene

Domains & Families for CXXC4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CXXC4-AS1 Gene

Function for CXXC4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CXXC4-AS1 Gene

Localization for CXXC4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CXXC4-AS1 Gene

Pathways & Interactions for CXXC4-AS1 Gene

SuperPathways for CXXC4-AS1 Gene

No Data Available

Interacting Proteins for CXXC4-AS1 Gene

Gene Ontology (GO) - Biological Process for CXXC4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CXXC4-AS1 Gene

Drugs & Compounds for CXXC4-AS1 Gene

No Compound Related Data Available

Transcripts for CXXC4-AS1 Gene

mRNA/cDNA for CXXC4-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CXXC4-AS1 Gene

No ASD Table

Relevant External Links for CXXC4-AS1 Gene

GeneLoc Exon Structure for
CXXC4-AS1
ECgene alternative splicing isoforms for
CXXC4-AS1

Expression for CXXC4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CXXC4-AS1 Gene

Orthologs for CXXC4-AS1 Gene

Evolution for CXXC4-AS1 Gene

ENSEMBL:
Gene Tree for CXXC4-AS1 (if available)
TreeFam:
Gene Tree for CXXC4-AS1 (if available)

No data available for Orthologs for CXXC4-AS1 Gene

Paralogs for CXXC4-AS1 Gene

No data available for Paralogs for CXXC4-AS1 Gene

Variants for CXXC4-AS1 Gene

Sequence variations from dbSNP and Humsavar for CXXC4-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000004041 -- 104,575,447(+) G/T intron_variant
rs1000039374 -- 104,533,752(+) G/A intron_variant
rs1000060029 -- 104,566,570(+) A/T intron_variant
rs1000065248 -- 104,603,598(+) A/G intron_variant
rs1000080911 -- 104,624,701(+) G/A intron_variant

Additional Variant Information for CXXC4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CXXC4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CXXC4-AS1 Gene

Disorders for CXXC4-AS1 Gene

Additional Disease Information for CXXC4-AS1

No disorders were found for CXXC4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CXXC4-AS1 Gene

Publications for CXXC4-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for CXXC4-AS1 Gene

Sources for CXXC4-AS1 Gene

Content
Loading form....