CUBNP2 Gene (Pseudogene)

Cubilin Pseudogene 2

GC10M045232
GIFtS:
6
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Aliases for CUBNP2 Gene

Aliases for CUBNP2 Gene

  • Cubilin Pseudogene 2 2 3 5
  • Cubilin (Intrinsic Factor-Cobalamin Receptor) Pseudogene 2 2 3
  • CUBNP2 5

External Ids for CUBNP2 Gene

Previous GeneCards Identifiers for CUBNP2 Gene

  • GC10M045729

Summaries for CUBNP2 Gene

GeneCards Summary for CUBNP2 Gene

CUBNP2 (Cubilin Pseudogene 2) is a Pseudogene.

Additional gene information for CUBNP2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CUBNP2 Gene

Genomics for CUBNP2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for CUBNP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J045249 Enhancer 0.8 ENCODE 0.7 -3.0 -3014 0.9 MNT CTCF REST VEZF1 NBN TRIM22 ZNF341 EBF1 SMC3 RAD21 WASHC2C AGAP4 ALOX5 CUBNP2 OR6D1P OR13A1 ZNF22
GH10J045238 Enhancer 0.7 Ensembl 0.4 +6.9 6861 4.2 ZFP91 TAL1 PRDM10 SPI1 TCF12 ATF4 L3MBTL2 MEIS2 ARID1B CEBPB ENSG00000227683 ZNF22 ZNF22-AS1 ZFAND4 ANKRD30BP3 OR13A1 RSU1P2 AGAP4 ALOX5 CUBNP2
GH10J045236 Enhancer 0.7 ENCODE 0.4 +12.0 11953 0.2 FEZF1 CTCF ZIC2 REST SMC3 RAD21 ZNF2 SCRT1 ELF3 GLIS1 CUBNP2 lnc-OR13A1-3 HSALNG0077655 OR13A1 ZNF22
GH10J045235 Enhancer 0.6 FANTOM5 ENCODE 0.4 +11.3 11285 0.4 IKZF1 FOS CHD4 ENSG00000227683 DEPP1 CUBNP2 lnc-OR13A1-3 HSALNG0077655 OR13A1 ZNF22
GH10J045253 Enhancer 0.5 Ensembl 0.4 -6.1 -6140 1.4 BCL11A BATF ATF4 JUNB SPI1 KDM1A RUNX3 LOC102724323 ENSG00000227683 OR13A1 AGAP4 OR6D1P CUBNP2 ZNF22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CUBNP2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CUBNP2 Gene

Latest Assembly
chr10:45,232,018-45,247,361
(GRCh38/hg38)
Size:
15,344 bases
Orientation:
Minus strand

Previous Assembly
chr10:45,727,474-45,742,809
(GRCh37/hg19 by Ensembl)
Size:
15,336 bases
Orientation:
Minus strand

Genomic View for CUBNP2 Gene

Genes around CUBNP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CUBNP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CUBNP2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CUBNP2 Gene

Proteins for CUBNP2 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for CUBNP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CUBNP2 Gene

Domains & Families for CUBNP2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CUBNP2 Gene

Function for CUBNP2 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for CUBNP2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CUBNP2 Gene

Localization for CUBNP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CUBNP2 Gene

Pathways & Interactions for CUBNP2 Gene

PathCards logo

SuperPathways for CUBNP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CUBNP2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CUBNP2 Gene

Drugs & Compounds for CUBNP2 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for CUBNP2 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for CUBNP2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CUBNP2 Gene

No ASD Table

Relevant External Links for CUBNP2 Gene

GeneLoc Exon Structure for
CUBNP2

Expression for CUBNP2 Gene

Products:

  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CUBNP2 Gene

mRNA expression in normal human tissues for CUBNP2 Gene
mRNA expression by GTEx for CUBNP2 Gene

mRNA differential expression in normal tissues according to GTEx for CUBNP2 Gene

This gene is overexpressed in Testis (x13.5), Esophagus - Mucosa (x7.0), Brain - Anterior cingulate cortex (BA24) (x6.2), and Cervix - Ectocervix (x5.8).
genes like me logo Genes that share expression patterns with CUBNP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CUBNP2 Gene

Orthologs for CUBNP2 Gene

Evolution for CUBNP2 Gene

ENSEMBL:
Gene Tree for CUBNP2 (if available)
TreeFam:
Gene Tree for CUBNP2 (if available)

No data available for Orthologs for CUBNP2 Gene

Paralogs for CUBNP2 Gene

No data available for Paralogs for CUBNP2 Gene

Variants for CUBNP2 Gene

Additional Variant Information for CUBNP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CUBNP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CUBNP2 Gene

Disorders for CUBNP2 Gene

No disorders were found for CUBNP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CUBNP2 Gene

Publications for CUBNP2 Gene

No publications were found for CUBNP2 Gene.

No data available for Mastermind for CUBNP2 Gene

Products for CUBNP2 Gene

Sources for CUBNP2 Gene