Aliases for CTXND2 Gene

Subcategory (RNA class) for CTXND2 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for CTXND2 Gene

  • Cortexin Domain Containing 2 2 3 4 5

External Ids for CTXND2 Gene

Summaries for CTXND2 Gene

GeneCards Summary for CTXND2 Gene

CTXND2 (Cortexin Domain Containing 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CTXND2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CTXND2 Gene

Genomics for CTXND2 Gene

GeneHancer (GH) Regulatory Elements for CTXND2 Gene

Promoters and enhancers for CTXND2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J150887 Enhancer 0.4 Ensembl 750.6 +0.1 65 0.4 CC2D1A RFX1 ZBTB5 ZFHX2 CTXND2 CTSK UBE2D3P3 HORMAD1 piR-32139
GH01J150889 Enhancer 0.8 Ensembl 0.6 +3.3 3264 2.8 SMARCE1 L3MBTL2 ZNF121 SP7 IKZF1 ZIC2 CEBPA TCF7L2 PRDM10 ZNF639 HORMAD1 POGZ VPS45 GABPB2 LYSMD1 RPRD2 RNU6-1309P CTSK UBE2D3P3 RNU6-1042P
GH01J150895 Enhancer 0.9 Ensembl ENCODE 0.4 +8.7 8680 0.9 POLR2A MNT SP7 PKNOX1 CREB1 ZNF629 CEBPB CHD2 JUN RCOR1 ANXA9 SETDB1 ARNT RNU6-1309P CTSK UBE2D3P3 PRUNE1 RNU6-884P HORMAD1 CTXND2
GH01J150906 Enhancer 0.6 ENCODE 0.4 +19.4 19404 0.2 ZNF217 ZNF133 MNT CTBP1 ZNF592 DPF2 GATA3 NCOA3 SIN3A RCOR1 POGZ MRPL9 RPRD2 PI4KB RPS27AP6 ARNT GABPB2 LYSMD1 CERS2 ENSG00000231073
GH01J150912 Enhancer 0.3 Ensembl 0.3 +25.6 25565 1 ATF2 ARNT CYCSP51 lnc-SETDB1-2 lnc-SETDB1-4 CTXND2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CTXND2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTXND2 Gene

Genomic Locations for CTXND2 Gene
chr1:150,887,136-150,913,292
(GRCh38/hg38)
Size:
26,157 bases
Orientation:
Plus strand

Genomic View for CTXND2 Gene

Genes around CTXND2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTXND2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTXND2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTXND2 Gene

Proteins for CTXND2 Gene

  • Protein details for CTXND2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GV90-CTXD2_HUMAN
    Recommended name:
    Cortexin domain containing 2
    Protein Accession:
    A0A1B0GV90

    Protein attributes for CTXND2 Gene

    Size:
    55 amino acids
    Molecular mass:
    5988 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CTXND2 Gene

Post-translational modifications for CTXND2 Gene

No Post-translational modifications

Other Protein References for CTXND2 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for CTXND2 Gene

Domains & Families for CTXND2 Gene

Protein Domains for CTXND2 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with CTXND2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CTXND2 Gene

Function for CTXND2 Gene

Phenotypes From GWAS Catalog for CTXND2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTXND2 Gene

Localization for CTXND2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CTXND2 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for CTXND2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
GO:0031224 intrinsic component of membrane IEA --
genes like me logo Genes that share ontologies with CTXND2: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CTXND2 Gene

Pathways & Interactions for CTXND2 Gene

PathCards logo

SuperPathways for CTXND2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CTXND2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTXND2 Gene

Drugs & Compounds for CTXND2 Gene

No Compound Related Data Available

Transcripts for CTXND2 Gene

mRNA/cDNA for CTXND2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CTXND2 Gene

No ASD Table

Relevant External Links for CTXND2 Gene

GeneLoc Exon Structure for
CTXND2
ECgene alternative splicing isoforms for
CTXND2

Expression for CTXND2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTXND2 Gene

Orthologs for CTXND2 Gene

Evolution for CTXND2 Gene

ENSEMBL:
Gene Tree for CTXND2 (if available)
TreeFam:
Gene Tree for CTXND2 (if available)

No data available for Orthologs for CTXND2 Gene

Paralogs for CTXND2 Gene

No data available for Paralogs for CTXND2 Gene

Variants for CTXND2 Gene

Sequence variations from dbSNP and Humsavar for CTXND2 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000048275 -- 150,901,106(+) T/C intron_variant
rs1000445602 -- 150,897,327(+) A/G intron_variant
rs1000568984 -- 150,889,003(+) C/T intron_variant
rs1000600159 -- 150,908,261(+) T/G intron_variant
rs1000625134 -- 150,901,595(+) A/G intron_variant

Additional Variant Information for CTXND2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTXND2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CTXND2 Gene

Disorders for CTXND2 Gene

Additional Disease Information for CTXND2

No disorders were found for CTXND2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTXND2 Gene

Publications for CTXND2 Gene

  1. Genome-wide association study identifies a new melanoma susceptibility locus at 1q21.3. (PMID: 21983785) Macgregor S … Hayward NK (Nature genetics 2011) 3 56
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 56
  3. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 56

No data available for External Links for CTXND2 Gene

Products for CTXND2 Gene

Sources for CTXND2 Gene