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Aliases for CTXND1 Gene

Aliases for CTXND1 Gene

  • Cortexin Domain Containing 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1314 2 3
  • Cortexin Domain-Containing 1 3
  • LINC01314 3

External Ids for CTXND1 Gene

Previous HGNC Symbols for CTXND1 Gene

  • LINC01314

Summaries for CTXND1 Gene

GeneCards Summary for CTXND1 Gene

CTXND1 (Cortexin Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is CTXND2.

Additional gene information for CTXND1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTXND1 Gene

Genomics for CTXND1 Gene

GeneHancer (GH) Regulatory Elements for CTXND1 Gene

Promoters and enhancers for CTXND1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J080283 Enhancer 0.4 ENCODE 25.2 -31.2 -31244 0.9 SKI SMAD4 CTXND1 ARNT2 RNU6-667P GC15P080333 LINC00927
GH15J080316 Enhancer 0.9 Ensembl ENCODE 11 -65.3 -65291 1.2 EBF1 CEBPG BATF IRF9 FOSL1 ZFHX2 EGR1 NFE2 FOS ATF7 CTXND1 ARNT2 GC15P080333 LINC00927
GH15J080178 Enhancer 1 Ensembl ENCODE dbSUPER 5.6 +72.4 72418 2.4 SMARCE1 JUN PAX8 DPF2 MNT SP1 JUND POLR2A CREB1 CUX1 ZFAND6 FAH CTXND1 GC15P080189 ENSG00000259967
GH15J080274 Enhancer 0.6 ENCODE 8.7 -23.1 -23123 2.3 SOX13 PKNOX1 TFAP4 ELF1 MNT ZNF335 GLIS1 FOS FOSL2 KDM1A ARNT2 RNU6-667P CTXND1 GC15P080333 LINC00927
GH15J080245 Enhancer 0.7 ENCODE 6.3 +5.6 5573 1.8 KLF1 FOXA2 TAF1 SAP130 ZFP64 ARID4B MAX YY1 POLR2A HNF4G FAH CTXND1 GC15P080189
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CTXND1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTXND1 Gene

Genomic Locations for CTXND1 Gene
56,783 bases
Minus strand
56,730 bases
Minus strand

Genomic View for CTXND1 Gene

Genes around CTXND1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTXND1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTXND1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTXND1 Gene

Proteins for CTXND1 Gene

  • Protein details for CTXND1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Cortexin domain-containing 1
    Protein Accession:

    Protein attributes for CTXND1 Gene

    59 amino acids
    Molecular mass:
    6734 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CTXND1 Gene

Post-translational modifications for CTXND1 Gene

No Post-translational modifications

Other Protein References for CTXND1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CTXND1 Gene

Domains & Families for CTXND1 Gene

Gene Families for CTXND1 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for CTXND1 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CTXND1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTXND1 Gene

Function for CTXND1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTXND1 Gene

Localization for CTXND1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CTXND1 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for CTXND1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
GO:0031224 intrinsic component of membrane IEA --
genes like me logo Genes that share ontologies with CTXND1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CTXND1 Gene

Pathways & Interactions for CTXND1 Gene

SuperPathways for CTXND1 Gene

No Data Available

Interacting Proteins for CTXND1 Gene

Gene Ontology (GO) - Biological Process for CTXND1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CTXND1 Gene

Drugs & Compounds for CTXND1 Gene

No Compound Related Data Available

Transcripts for CTXND1 Gene

mRNA/cDNA for CTXND1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTXND1 Gene

No ASD Table

Relevant External Links for CTXND1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CTXND1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CTXND1 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTXND1 Gene

Orthologs for CTXND1 Gene

Evolution for CTXND1 Gene

Gene Tree for CTXND1 (if available)
Gene Tree for CTXND1 (if available)

No data available for Orthologs for CTXND1 Gene

Paralogs for CTXND1 Gene

Paralogs for CTXND1 Gene

genes like me logo Genes that share paralogs with CTXND1: view

Variants for CTXND1 Gene

Sequence variations from dbSNP and Humsavar for CTXND1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000044669 -- 80,239,464(-) G/A intron_variant
rs1000073896 -- 80,235,895(-) T/G intron_variant
rs1000088319 -- 80,241,234(-) G/T intron_variant
rs1000140483 -- 80,252,669(-) T/G upstream_transcript_variant
rs1000172079 -- 80,250,787(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CTXND1 Gene

Variant ID Type Subtype PubMed ID
esv2677786 CNV deletion 23128226
esv3350295 CNV insertion 20981092
esv3637015 CNV loss 21293372
nsv1108969 CNV deletion 24896259
nsv1160312 OTHER complex 26073780
nsv1635 CNV insertion 18451855
nsv442379 CNV loss 18776908

Additional Variant Information for CTXND1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTXND1 Gene

Disorders for CTXND1 Gene

No disorders were found for CTXND1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTXND1 Gene

Publications for CTXND1 Gene

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody MC … Nusbaum C (Nature 2006) 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for CTXND1 Gene

Sources for CTXND1 Gene

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