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Aliases for CTSLP2 Gene

Aliases for CTSLP2 Gene

  • Cathepsin L Pseudogene 2 2 3 5
  • Cathepsin L1 Pseudogene 2 2 3
  • Cathepsin L1 Pseudogene 5 2 3
  • Cathepsin L1 Pseudogene 7 2 3
  • Cathepsin L Pseudogene 5 2 3
  • Cathepsin L Pseudogene 7 2 3
  • Cathepsin L-Like 2 2 3
  • Cathepsin L-Like 5 2
  • Cathepsin L-Like 7 2
  • BA342C24.4 3
  • BA144G6.6 3
  • CTSL1P2 3
  • CTSL1P5 3
  • CTSL1P7 3
  • CTSLL2 3
  • CTSLL5 3
  • CTSLL7 3
  • CTSLP5 3
  • CTSLP7 3

External Ids for CTSLP2 Gene

Previous HGNC Symbols for CTSLP2 Gene

  • CTSLL2
  • CTSL1P2
  • CTSLP5
  • CTSLL5
  • CTSL1P5
  • CTSLP7
  • CTSLL7
  • CTSL1P7

Previous GeneCards Identifiers for CTSLP2 Gene

  • GC10P048156

Summaries for CTSLP2 Gene

GeneCards Summary for CTSLP2 Gene

CTSLP2 (Cathepsin L Pseudogene 2) is a Pseudogene.

Additional gene information for CTSLP2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTSLP2 Gene

Genomics for CTSLP2 Gene

GeneHancer (GH) Regulatory Elements for CTSLP2 Gene

Promoters and enhancers for CTSLP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I047590 Enhancer 0.4 Ensembl 0.4 -7.5 -7482 0.2 MAFG CBFA2T3 CTSLP2 LOC102724643 ANXA8
GH10I047565 Enhancer 0.2 Ensembl 0.4 +17.8 17788 1.1 DUSP8P3 GLUD1P8 CTSLP2 ANXA8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTSLP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTSLP2 Gene

Genomic Locations for CTSLP2 Gene
chr10:47,580,671-47,583,419
(GRCh38/hg38)
Size:
2,749 bases
Orientation:
Minus strand
chr10:48,155,943-48,158,691
(GRCh37/hg19)

Genomic View for CTSLP2 Gene

Genes around CTSLP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTSLP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTSLP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTSLP2 Gene

Proteins for CTSLP2 Gene

Post-translational modifications for CTSLP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTSLP2 Gene

Domains & Families for CTSLP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTSLP2 Gene

Function for CTSLP2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTSLP2 Gene

Localization for CTSLP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTSLP2 Gene

Pathways & Interactions for CTSLP2 Gene

SuperPathways for CTSLP2 Gene

No Data Available

Interacting Proteins for CTSLP2 Gene

Gene Ontology (GO) - Biological Process for CTSLP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTSLP2 Gene

Drugs & Compounds for CTSLP2 Gene

No Compound Related Data Available

Transcripts for CTSLP2 Gene

mRNA/cDNA for CTSLP2 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTSLP2 Gene

No ASD Table

Relevant External Links for CTSLP2 Gene

GeneLoc Exon Structure for
CTSLP2
ECgene alternative splicing isoforms for
CTSLP2

Expression for CTSLP2 Gene

mRNA differential expression in normal tissues according to GTEx for CTSLP2 Gene

This gene is overexpressed in Liver (x8.4), Pancreas (x7.6), Kidney - Cortex (x6.1), and Thyroid (x6.0).

NURSA nuclear receptor signaling pathways regulating expression of CTSLP2 Gene:

CTSLP2

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTSLP2 Gene

Orthologs for CTSLP2 Gene

Evolution for CTSLP2 Gene

ENSEMBL:
Gene Tree for CTSLP2 (if available)
TreeFam:
Gene Tree for CTSLP2 (if available)

No data available for Orthologs for CTSLP2 Gene

Paralogs for CTSLP2 Gene

No data available for Paralogs for CTSLP2 Gene

Variants for CTSLP2 Gene

Sequence variations from dbSNP and Humsavar for CTSLP2 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs112242505 -- 47,581,603(-) T/C intron_variant
rs112397367 -- 47,584,813(-) A/C upstream_transcript_variant
rs113128140 -- 47,581,901(-) C/T intron_variant
rs113938017 -- 47,581,478(-) A/T non_coding_transcript_variant
rs182028404 -- 47,584,058(-) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CTSLP2 Gene

Variant ID Type Subtype PubMed ID
dgv137e199 CNV deletion 23128226
dgv443n106 CNV deletion 24896259
nsv1068309 CNV deletion 25765185
nsv550805 CNV loss 21841781
nsv821424 CNV duplication 20802225
nsv947968 CNV duplication 23825009
nsv951577 CNV deletion 24416366

Additional Variant Information for CTSLP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTSLP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTSLP2 Gene

Disorders for CTSLP2 Gene

Additional Disease Information for CTSLP2

No disorders were found for CTSLP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTSLP2 Gene

Publications for CTSLP2 Gene

  1. A novel family of cathepsin L-like (CTSLL) sequences on human chromosome 10q and related transcripts. (PMID: 7713509) Bryce SD … Lunec J (Genomics 1994) 2 3 58

Products for CTSLP2 Gene

Sources for CTSLP2 Gene

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