CTF2P Gene (Pseudogene)

Cardiotrophin 2, Pseudogene

GC16M030916
GIFtS:
6
The cytokine neuropoietin belongs to the IL-6 superfamily. This gene has been inactivated by mutation and is nonfunctional in humans. [provided by RefSeq, Mar 2013] See more...

Aliases for CTF2P Gene

Aliases for CTF2P Gene

  • Cardiotrophin 2, Pseudogene 2 3 5
  • Neuropoietin 2 3
  • NP 2 3
  • Ortholog Of Mouse Neuropoietin (Pseudogene In Humans) 3
  • CTF2P 5

External Ids for CTF2P Gene

Previous GeneCards Identifiers for CTF2P Gene

  • GC16M030824
  • GC16M030825
  • GC16M031001
  • GC16M028562

Summaries for CTF2P Gene

Entrez Gene Summary for CTF2P Gene

  • The cytokine neuropoietin belongs to the IL-6 superfamily. This gene has been inactivated by mutation and is nonfunctional in humans. [provided by RefSeq, Mar 2013]

GeneCards Summary for CTF2P Gene

CTF2P (Cardiotrophin 2, Pseudogene) is a Pseudogene.

Additional gene information for CTF2P Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CTF2P Gene

Genomics for CTF2P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for CTF2P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J030910 Enhancer 0.6 Ensembl CraniofacialAtlas 600.7 -0.3 -293 1.2 ZSCAN4 GLIS1 KLF1 ZNF121 CTF2P lnc-BCL7C-3 HSD3B7 ENSG00000260911 piR-37749 CTF1 FBXL19
GH16J030901 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas 0.4 +7.0 6992 3.9 HNRNPL CTCF ZNF692 RCOR2 ZNF7 BACH1 LARP7 GABPA ZNF143 ZIC2 HSD3B7 ENSG00000260911 VKORC1 ZNF629 KAT8 GDPD3 CTF1 CTF2P lnc-BCL7C-3 FBXL19
GH16J030907 Enhancer 0.4 Ensembl 0.7 +2.5 2507 1.2 KDM1A ZMYM3 AHR HSD3B7 CTF2P lnc-BCL7C-3 CTF1 FBXL19
GH16J030914 Enhancer 0.3 Ensembl 0.7 -4.2 -4193 0.2 NR2C1 piR-37749 CTF2P FBXL19 CTF1
GH16J030915 Enhancer 0.3 Ensembl 0.4 -5.3 -5293 0.4 NR2F1 ZNF121 piR-37749 CTF2P FBXL19 CTF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CTF2P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CTF2P Gene

Genomic Locations for CTF2P Gene
chr16:30,904,248-30,910,308
(GRCh38/hg38)
Size:
6,061 bases
Orientation:
Minus strand
chr16:30,915,669-30,921,529
(GRCh37/hg19)
Size:
5,861 bases
Orientation:
Minus strand

Genomic View for CTF2P Gene

Genes around CTF2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTF2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTF2P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CTF2P Gene

Proteins for CTF2P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for CTF2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTF2P Gene

Domains & Families for CTF2P Gene

Gene Families for CTF2P Gene

HGNC:
genes like me logo Genes that share domains with CTF2P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CTF2P Gene

Function for CTF2P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for CTF2P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTF2P Gene

Localization for CTF2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTF2P Gene

Pathways & Interactions for CTF2P Gene

PathCards logo

SuperPathways for CTF2P Gene

No Data Available

Gene Ontology (GO) - Biological Process for CTF2P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CTF2P Gene

Drugs & Compounds for CTF2P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CTF2P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for CTF2P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTF2P Gene

No ASD Table

Relevant External Links for CTF2P Gene

GeneLoc Exon Structure for
CTF2P

Expression for CTF2P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CTF2P Gene

mRNA expression in normal human tissues for CTF2P Gene
mRNA expression by GTEx for CTF2P Gene
genes like me logo Genes that share expression patterns with CTF2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTF2P Gene

Orthologs for CTF2P Gene

Evolution for CTF2P Gene

ENSEMBL:
Gene Tree for CTF2P (if available)
TreeFam:
Gene Tree for CTF2P (if available)

No data available for Orthologs for CTF2P Gene

Paralogs for CTF2P Gene

No data available for Paralogs for CTF2P Gene

Variants for CTF2P Gene

Additional Variant Information for CTF2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTF2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CTF2P Gene

Disorders for CTF2P Gene

No disorders were found for CTF2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CTF2P Gene

Publications for CTF2P Gene

  1. Neuropoietin, a new IL-6-related cytokine signaling through the ciliary neurotrophic factor receptor. (PMID: 15051883) Derouet D … Chevalier S (Proceedings of the National Academy of Sciences of the United States of America 2004) 2 3
  2. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) Willer CJ … Global Lipids Genetics Consortium (Nature genetics 2013) 3
  3. Biological, clinical and population relevance of 95 loci for blood lipids. (PMID: 20686565) Teslovich TM … Kathiresan S (Nature 2010) 3
  4. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3
  5. Comparative genomics search for losses of long-established genes on the human lineage. (PMID: 18085818) Zhu J … Haussler D (PLoS computational biology 2007) 3

ExternalLinks

View latest publications for CTF2P gene in Mastermind

Products for CTF2P Gene

Sources for CTF2P Gene