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Aliases for CTD-2350J17.1 Gene

Subcategory (RNA class) for CTD-2350J17.1 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTD-2350J17.1 Gene

  • Uncharacterized LOC101929472 3 5

External Ids for CTD-2350J17.1 Gene

Summaries for CTD-2350J17.1 Gene

GeneCards Summary for CTD-2350J17.1 Gene

CTD-2350J17.1 (Uncharacterized LOC101929472) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTD-2350J17.1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTD-2350J17.1 Gene

Genomics for CTD-2350J17.1 Gene

GeneHancer (GH) Regulatory Elements for CTD-2350J17.1 Gene

Promoters and enhancers for CTD-2350J17.1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I015620 Enhancer 0.7 Ensembl ENCODE 10.7 -6.1 -6086 2.1 JUND POLR2A JUN USF2 MAX FOS CTD-2350J17.1 GC05P015675 FBXL7
GH05I015634 Enhancer 0.2 ENCODE 13.4 -20.3 -20341 1.5 CTD-2350J17.1 GC05P015675 FBXL7
GH05I015646 Enhancer 0.2 ENCODE 7.2 -31.6 -31565 0.2 CTD-2350J17.1 GC05P015675 FBXL7
GH05I015612 Promoter 0.5 EPDnew 0.8 +2.2 2213 0.1 FBXL7 CTD-2350J17.1 PIR59856
GH05I015645 Enhancer 0.4 Ensembl 0.3 -30.6 -30599 0.8 JUN MAX GC05P015675 CTD-2350J17.1 FBXL7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTD-2350J17.1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTD-2350J17.1 Gene

Genomic Locations for CTD-2350J17.1 Gene
chr5:15,602,189-15,615,002
(GRCh38/hg38)
Size:
12,814 bases
Orientation:
Minus strand
chr5:15,602,298-15,607,457
(GRCh37/hg19)

Genomic View for CTD-2350J17.1 Gene

Genes around CTD-2350J17.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTD-2350J17.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTD-2350J17.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTD-2350J17.1 Gene

Proteins for CTD-2350J17.1 Gene

Post-translational modifications for CTD-2350J17.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTD-2350J17.1 Gene

Domains & Families for CTD-2350J17.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTD-2350J17.1 Gene

Function for CTD-2350J17.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTD-2350J17.1 Gene

Localization for CTD-2350J17.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTD-2350J17.1 Gene

Pathways & Interactions for CTD-2350J17.1 Gene

SuperPathways for CTD-2350J17.1 Gene

No Data Available

Interacting Proteins for CTD-2350J17.1 Gene

Gene Ontology (GO) - Biological Process for CTD-2350J17.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTD-2350J17.1 Gene

Drugs & Compounds for CTD-2350J17.1 Gene

No Compound Related Data Available

Transcripts for CTD-2350J17.1 Gene

mRNA/cDNA for CTD-2350J17.1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTD-2350J17.1 Gene

No ASD Table

Relevant External Links for CTD-2350J17.1 Gene

GeneLoc Exon Structure for
CTD-2350J17.1

Expression for CTD-2350J17.1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTD-2350J17.1 Gene

mRNA differential expression in normal tissues according to GTEx for CTD-2350J17.1 Gene

This gene is overexpressed in Testis (x45.6).
genes like me logo Genes that share expression patterns with CTD-2350J17.1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTD-2350J17.1 Gene

Orthologs for CTD-2350J17.1 Gene

Evolution for CTD-2350J17.1 Gene

ENSEMBL:
Gene Tree for CTD-2350J17.1 (if available)
TreeFam:
Gene Tree for CTD-2350J17.1 (if available)

No data available for Orthologs for CTD-2350J17.1 Gene

Paralogs for CTD-2350J17.1 Gene

No data available for Paralogs for CTD-2350J17.1 Gene

Variants for CTD-2350J17.1 Gene

Sequence variations from dbSNP and Humsavar for CTD-2350J17.1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000397444 -- 15,608,996(-) C/T intron_variant
rs1000845028 -- 15,604,126(-) C/A intron_variant
rs1000870618 -- 15,605,955(-) C/T intron_variant
rs1001156523 -- 15,616,869(-) C/T upstream_transcript_variant
rs1001510407 -- 15,606,898(-) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CTD-2350J17.1 Gene

Variant ID Type Subtype PubMed ID
esv2671030 CNV deletion 23128226
esv3604112 CNV loss 21293372
nsv4732 CNV deletion 18451855
nsv4733 CNV insertion 18451855
nsv516929 CNV gain+loss 19592680
nsv830214 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for CTD-2350J17.1 Gene

Disorders for CTD-2350J17.1 Gene

Additional Disease Information for CTD-2350J17.1

No disorders were found for CTD-2350J17.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTD-2350J17.1 Gene

Publications for CTD-2350J17.1 Gene

No publications were found for CTD-2350J17.1 Gene.

Products for CTD-2350J17.1 Gene

Sources for CTD-2350J17.1 Gene

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