Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CTD-2201I18.1 Gene

Subcategory (RNA class) for CTD-2201I18.1 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTD-2201I18.1 Gene

  • Uncharacterized LOC101929215 3 5

External Ids for CTD-2201I18.1 Gene

Previous GeneCards Identifiers for CTD-2201I18.1 Gene

  • GC05M079349

Summaries for CTD-2201I18.1 Gene

GeneCards Summary for CTD-2201I18.1 Gene

CTD-2201I18.1 (Uncharacterized LOC101929215) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTD-2201I18.1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTD-2201I18.1 Gene

Genomics for CTD-2201I18.1 Gene

GeneHancer (GH) Regulatory Elements for CTD-2201I18.1 Gene

Promoters and enhancers for CTD-2201I18.1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I080082 Enhancer 1 Ensembl ENCODE 550.8 +0.4 376 1.9 ATF1 FOXA2 RB1 SIN3A RAD21 YY1 ZNF335 ZNF366 ZNF143 EGR2 CTD-2201I18.1 ENSG00000251675 SERINC5 THBS4 TRMT112P2
GH05I080251 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.3 -171.5 -171524 7.7 HDGF PKNOX1 SMAD1 ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 E2F8 GC05P080257 SERINC5 PAPD4 RPS3AP20 MTX3 ENSG00000251675 CTD-2201I18.1 THBS4 DHFR GC05P080258
GH05I080179 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.1 -104.2 -104191 17.2 PKNOX1 CLOCK FOXA2 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 YY1 SLC30A9 SERINC5 ENSG00000251675 CTD-2201I18.1 THBS4 DHFR LINC01337 GC05P080147
GH05I080228 Enhancer 1.3 Ensembl ENCODE dbSUPER 9.4 -146.9 -146888 3.1 ELF3 FOXA2 MLX THRB ZSCAN9 RARA YY1 ZNF121 SMARCC2 FOS SERINC5 ENSG00000251675 CTD-2201I18.1 THBS4 GC05P080147
GH05I080134 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.5 -55.4 -55409 9.3 CTCF ZNF133 MAX SIN3A EBF1 RAD21 POLR2A NFATC1 ZNF143 ETV6 GC05M080138 SERINC5 CTD-2201I18.1 THBS4 ENSG00000251675
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTD-2201I18.1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTD-2201I18.1 Gene

Genomic Locations for CTD-2201I18.1 Gene
chr5:80,052,374-80,083,665
(GRCh38/hg38)
Size:
31,292 bases
Orientation:
Minus strand
chr5:79,348,197-79,379,477
(GRCh37/hg19)

Genomic View for CTD-2201I18.1 Gene

Genes around CTD-2201I18.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTD-2201I18.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTD-2201I18.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTD-2201I18.1 Gene

Proteins for CTD-2201I18.1 Gene

Post-translational modifications for CTD-2201I18.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTD-2201I18.1 Gene

Domains & Families for CTD-2201I18.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTD-2201I18.1 Gene

Function for CTD-2201I18.1 Gene

Phenotypes From GWAS Catalog for CTD-2201I18.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTD-2201I18.1 Gene

Localization for CTD-2201I18.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTD-2201I18.1 Gene

Pathways & Interactions for CTD-2201I18.1 Gene

SuperPathways for CTD-2201I18.1 Gene

No Data Available

Interacting Proteins for CTD-2201I18.1 Gene

Gene Ontology (GO) - Biological Process for CTD-2201I18.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTD-2201I18.1 Gene

Drugs & Compounds for CTD-2201I18.1 Gene

No Compound Related Data Available

Transcripts for CTD-2201I18.1 Gene

mRNA/cDNA for CTD-2201I18.1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTD-2201I18.1 Gene

No ASD Table

Relevant External Links for CTD-2201I18.1 Gene

GeneLoc Exon Structure for
CTD-2201I18.1

Expression for CTD-2201I18.1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTD-2201I18.1 Gene

mRNA differential expression in normal tissues according to GTEx for CTD-2201I18.1 Gene

This gene is overexpressed in Heart - Left Ventricle (x5.7), Nerve - Tibial (x4.7), and Muscle - Skeletal (x4.1).
genes like me logo Genes that share expression patterns with CTD-2201I18.1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTD-2201I18.1 Gene

Orthologs for CTD-2201I18.1 Gene

Evolution for CTD-2201I18.1 Gene

ENSEMBL:
Gene Tree for CTD-2201I18.1 (if available)
TreeFam:
Gene Tree for CTD-2201I18.1 (if available)

No data available for Orthologs for CTD-2201I18.1 Gene

Paralogs for CTD-2201I18.1 Gene

No data available for Paralogs for CTD-2201I18.1 Gene

Variants for CTD-2201I18.1 Gene

Sequence variations from dbSNP and Humsavar for CTD-2201I18.1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs745310807 uncertain-significance, Hirschsprung disease 1 80,073,320(-) C/T intron_variant
rs1000534990 -- 80,076,572(-) C/A/T intron_variant
rs1000581458 -- 80,083,401(-) A/G intron_variant
rs1000903528 -- 80,078,308(-) G/C intron_variant
rs1000942075 -- 80,071,409(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CTD-2201I18.1 Gene

Variant ID Type Subtype PubMed ID
esv3570228 CNV loss 25503493
esv3605549 CNV loss 21293372
esv3890662 CNV loss 25118596

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for CTD-2201I18.1 Gene

Disorders for CTD-2201I18.1 Gene

Additional Disease Information for CTD-2201I18.1

No disorders were found for CTD-2201I18.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTD-2201I18.1 Gene

Publications for CTD-2201I18.1 Gene

  1. Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network. (PMID: 25436638) Malinowski JR … Crawford DC (PloS one 2014) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CTD-2201I18.1 Gene

Sources for CTD-2201I18.1 Gene

Content
Loading form....