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Aliases for CTD-2154B17.1 Gene

Subcategory (RNA class) for CTD-2154B17.1 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for CTD-2154B17.1 Gene

  • Uncharacterized CTD-2154B17.1 3
  • AC012629.1 5

External Ids for CTD-2154B17.1 Gene

Previous GeneCards Identifiers for CTD-2154B17.1 Gene

  • GC05U901992

Summaries for CTD-2154B17.1 Gene

GeneCards Summary for CTD-2154B17.1 Gene

CTD-2154B17.1 (Uncharacterized CTD-2154B17.1) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTD-2154B17.1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTD-2154B17.1 Gene

Genomics for CTD-2154B17.1 Gene

GeneHancer (GH) Regulatory Elements for CTD-2154B17.1 Gene

Promoters and enhancers for CTD-2154B17.1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J010248 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14.6 +536.7 536674 4.1 CLOCK MLX ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC CCT5 FAM173B ROPN1L-AS1 LINC02221 CTD-2154B17.1 ENSG00000248525 ENSG00000250001 MARCH6 CMBL ENSG00000271980
GH05J010606 Enhancer 1.4 FANTOM5 Ensembl ENCODE 14.6 +179.3 179270 2.5 HDGF PKNOX1 ARNT FEZF1 ZNF2 IRF4 YY1 ZNF766 ZNF213 JUNB ROPN1L-AS1 ANKRD33B CTD-2154B17.1 LINC02221 ENSG00000248525 ANKRD33B-AS1 LINC02213 ROPN1L FAM173B LINC01513
GH05J010507 Enhancer 1 ENCODE 14.6 +279.2 279159 0.6 PKNOX1 ATF1 ARNT SIN3A FEZF1 NCOA2 TCF12 ZNF766 ATF7 FOS ROPN1L-AS1 CTD-2154B17.1 LINC02221 ENSG00000248525 ENSG00000250001 LINC02212 LINC02213
GH05J010759 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.7 25741 4.2 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 DAP LOC105374652 MARCH6 CMBL ROPN1L CTD-2154B17.1
GH05J010788 Enhancer 0.7 ENCODE 0.7 -2.4 -2393 1.9 CEBPG FOSL1 TCF12 NCOR1 EGR1 CBFA2T2 NFE2 FOS SOX6 BHLHE40 LOC105374652 DAP CTD-2154B17.1 GC05M010841
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTD-2154B17.1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTD-2154B17.1 Gene

Genomic Locations for CTD-2154B17.1 Gene
chr5:10,774,934-10,787,035
(GRCh38/hg38)
Size:
12,102 bases
Orientation:
Minus strand

Genomic View for CTD-2154B17.1 Gene

Genes around CTD-2154B17.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTD-2154B17.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTD-2154B17.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTD-2154B17.1 Gene

Proteins for CTD-2154B17.1 Gene

Post-translational modifications for CTD-2154B17.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTD-2154B17.1 Gene

Domains & Families for CTD-2154B17.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTD-2154B17.1 Gene

Function for CTD-2154B17.1 Gene

Phenotypes From GWAS Catalog for CTD-2154B17.1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTD-2154B17.1 Gene

Localization for CTD-2154B17.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTD-2154B17.1 Gene

Pathways & Interactions for CTD-2154B17.1 Gene

SuperPathways for CTD-2154B17.1 Gene

No Data Available

Interacting Proteins for CTD-2154B17.1 Gene

Gene Ontology (GO) - Biological Process for CTD-2154B17.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTD-2154B17.1 Gene

Drugs & Compounds for CTD-2154B17.1 Gene

No Compound Related Data Available

Transcripts for CTD-2154B17.1 Gene

mRNA/cDNA for CTD-2154B17.1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTD-2154B17.1 Gene

No ASD Table

Relevant External Links for CTD-2154B17.1 Gene

GeneLoc Exon Structure for
CTD-2154B17.1

Expression for CTD-2154B17.1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTD-2154B17.1 Gene

genes like me logo Genes that share expression patterns with CTD-2154B17.1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTD-2154B17.1 Gene

Orthologs for CTD-2154B17.1 Gene

Evolution for CTD-2154B17.1 Gene

ENSEMBL:
Gene Tree for CTD-2154B17.1 (if available)
TreeFam:
Gene Tree for CTD-2154B17.1 (if available)

No data available for Orthologs for CTD-2154B17.1 Gene

Paralogs for CTD-2154B17.1 Gene

No data available for Paralogs for CTD-2154B17.1 Gene

Variants for CTD-2154B17.1 Gene

Sequence variations from dbSNP and Humsavar for CTD-2154B17.1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000013739 -- 10,779,293(-) C/T intron_variant
rs1000065992 -- 10,779,543(-) G/C intron_variant
rs1000421270 -- 10,781,923(-) A/G intron_variant
rs1000624008 -- 10,786,879(-) T/A/G intron_variant
rs1000700388 -- 10,780,114(-) G/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for CTD-2154B17.1 Gene

Disorders for CTD-2154B17.1 Gene

No disorders were found for CTD-2154B17.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CTD-2154B17.1 Gene

Publications for CTD-2154B17.1 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for CTD-2154B17.1 Gene

Sources for CTD-2154B17.1 Gene

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