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Aliases for CTBP1-DT Gene

Subcategory (RNA class) for CTBP1-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CTBP1-DT Gene

  • CTBP1 Divergent Transcript 2 3
  • CTBP1 Antisense RNA 1 (Head To Head) 2 3
  • CTBP1 Antisense RNA 2 (Head To Head) 2 3
  • CTBP1 Antisense RNA 1 (Non-Protein Coding) 3
  • Chromosome 4 Open Reading Frame 42 2
  • CTBP1-AS1 3
  • CTBP1-AS2 3
  • C4orf42 3

External Ids for CTBP1-DT Gene

Previous HGNC Symbols for CTBP1-DT Gene

  • C4orf42
  • CTBP1-AS1
  • CTBP1-AS2

Summaries for CTBP1-DT Gene

GeneCards Summary for CTBP1-DT Gene

CTBP1-DT (CTBP1 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CTBP1-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTBP1-DT Gene

Genomics for CTBP1-DT Gene

GeneHancer (GH) Regulatory Elements for CTBP1-DT Gene

Promoters and enhancers for CTBP1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J001240 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 24.8 -3.4 -3417 10.5 HDGF PKNOX1 ATF1 ARNT SIN3A YY1 ZNF766 GLIS2 ZNF207 ZNF143 CTBP1 MAEA CTBP1-DT UVSSA CRIPAK NELFA ZNF141 PCGF3 HAUS3 ENSG00000270195
GH04J001197 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 16.6 -44.8 -44790 13.8 HDGF PKNOX1 SMAD1 MLX ZFP64 ARID4B DMAP1 IRF4 YY1 SLC30A9 SPON2 CRIPAK UVSSA CTBP1-DT CTBP1 MAEA RNF212 ENSG00000273179 LOC101928548 LOC100130872
GH04J001308 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE 19.1 +61.0 61003 4 ELF3 MLX ARID4B DMAP1 ZBTB40 RAD21 RARA ETS1 ZNF614 EGR1 GC04M001306 MAEA CTBP1-DT UVSSA DGKQ GC04M001299
GH04J001212 Enhancer 1.2 Ensembl ENCODE dbSUPER 16.5 -33.4 -33409 8 HDGF PKNOX1 SMAD1 STAT5A BMI1 BATF IRF4 ZNF207 ATF7 ETV6 CRIPAK UVSSA CTBP1-DT MAEA CTBP1 LOC105374344 RNF212 CTBP1-AS
GH04J001191 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.7 -55.7 -55679 5 RAD21 YY1 GLIS2 FOS ATF7 RXRA USF2 REST NR2F2 SP1 CRIPAK UVSSA CTBP1-DT CTBP1 MAEA RNF212 SLC26A1 FGFRL1 ENSG00000270195 LOC101928548
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTBP1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTBP1-DT Gene

Genomic Locations for CTBP1-DT Gene
chr4:1,249,440-1,253,007
(GRCh38/hg38)
Size:
3,568 bases
Orientation:
Plus strand
chr4:1,243,088-1,282,079
(GRCh37/hg19)
Size:
38,992 bases
Orientation:
Plus strand

Genomic View for CTBP1-DT Gene

Genes around CTBP1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTBP1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTBP1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTBP1-DT Gene

Proteins for CTBP1-DT Gene

Post-translational modifications for CTBP1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTBP1-DT Gene

Domains & Families for CTBP1-DT Gene

Suggested Antigen Peptide Sequences for CTBP1-DT Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for CTBP1-DT Gene

Function for CTBP1-DT Gene

Phenotypes From GWAS Catalog for CTBP1-DT Gene

Phenotypes for CTBP1-DT Gene

genes like me logo Genes that share phenotypes with CTBP1-DT: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CTBP1-DT

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTBP1-DT Gene

Localization for CTBP1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTBP1-DT Gene

Pathways & Interactions for CTBP1-DT Gene

SuperPathways for CTBP1-DT Gene

No Data Available

Interacting Proteins for CTBP1-DT Gene

Gene Ontology (GO) - Biological Process for CTBP1-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTBP1-DT Gene

Drugs & Compounds for CTBP1-DT Gene

No Compound Related Data Available

Transcripts for CTBP1-DT Gene

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CTBP1-DT

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTBP1-DT Gene

No ASD Table

Relevant External Links for CTBP1-DT Gene

GeneLoc Exon Structure for
CTBP1-DT
ECgene alternative splicing isoforms for
CTBP1-DT

Expression for CTBP1-DT Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTBP1-DT Gene

Orthologs for CTBP1-DT Gene

No data available for Orthologs and Evolution for CTBP1-DT Gene

Paralogs for CTBP1-DT Gene

No data available for Paralogs for CTBP1-DT Gene

Variants for CTBP1-DT Gene

Sequence variations from dbSNP and Humsavar for CTBP1-DT Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000248071 -- 1,249,984(+) C/T intron_variant
rs1000365735 -- 1,248,861(+) CCCGCCCCGCCCCGCCCC/CCCGCCCC/CCCGCCCCGCCCCGCCCCGCCCC upstream_transcript_variant
rs1000723951 -- 1,250,172(+) C/T non_coding_transcript_variant
rs1000819786 -- 1,248,715(+) G/A upstream_transcript_variant
rs1001488921 -- 1,248,685(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CTBP1-DT Gene

Variant ID Type Subtype PubMed ID
dgv2704n106 CNV deletion 24896259
dgv636n27 CNV loss 19166990
dgv8891n54 CNV loss 21841781
dgv8892n54 CNV loss 21841781
dgv8893n54 CNV gain 21841781
dgv8894n54 CNV loss 21841781
esv27609 CNV loss 19812545
nsv829835 CNV gain 17160897
nsv822433 CNV gain 20364138
nsv822425 CNV loss 20364138
nsv593298 CNV loss 21841781
nsv593297 CNV loss 21841781
nsv593293 CNV loss 21841781
nsv593291 CNV gain+loss 21841781
nsv593290 CNV loss 21841781
nsv593287 CNV gain 21841781
nsv593286 CNV gain 21841781
nsv593282 CNV gain 21841781
nsv593281 CNV loss 21841781
nsv593278 CNV loss 21841781
nsv508988 CNV insertion 20534489

Additional Variant Information for CTBP1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTBP1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTBP1-DT Gene

Disorders for CTBP1-DT Gene

Additional Disease Information for CTBP1-DT

No disorders were found for CTBP1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTBP1-DT Gene

Publications for CTBP1-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  3. A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations. (PMID: 22456796) Imamura M … Kadowaki T (Human molecular genetics 2012) 3 58
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual JF … Vidal M (Nature 2005) 3 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for CTBP1-DT Gene

Sources for CTBP1-DT Gene

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