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Aliases for CTBP1-AS Gene

Subcategory (RNA class) for CTBP1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CTBP1-AS Gene

  • CTBP1 Antisense RNA 2 3 5
  • Prostate Cancer Associated Transcript 10 2 3
  • PCAT10 3

External Ids for CTBP1-AS Gene

Summaries for CTBP1-AS Gene

GeneCards Summary for CTBP1-AS Gene

CTBP1-AS (CTBP1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CTBP1-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTBP1-AS Gene

Genomics for CTBP1-AS Gene

GeneHancer (GH) Regulatory Elements for CTBP1-AS Gene

Promoters and enhancers for CTBP1-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I001197 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 0.4 -5.5 -5470 13.8 HDGF PKNOX1 SMAD1 MLX ZFP64 ARID4B DMAP1 IRF4 YY1 SLC30A9 SPON2 CRIPAK CTBP1-AS2 UVSSA CTBP1 MAEA RNF212 ENSG00000273179 LOC101928548 LOC100130872
GH04I001240 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 0.3 +35.9 35903 10.5 HDGF PKNOX1 ATF1 ARNT SIN3A YY1 ZNF766 GLIS2 ZNF207 ZNF143 CTBP1 MAEA CTBP1-AS2 UVSSA CRIPAK ZNF732 PIR37123 CTBP1-AS
GH04I001212 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +5.9 5911 8 HDGF PKNOX1 SMAD1 BMI1 BATF IRF4 ZNF207 ATF7 ETV6 BCLAF1 CTBP1-AS2 CRIPAK UVSSA MAEA CTBP1 RNF212 LOC105374344 CTBP1-AS
GH04I001232 Enhancer 0.8 ENCODE dbSUPER 0.3 +23.7 23654 3 CTCF MXI1 RFX1 SAP130 BMI1 RAD21 NR2F2 RARA FOXP2 SMAD4 CRIPAK MAEA CTBP1-AS2 CTBP1 CTBP1-AS
GH04I001221 Enhancer 0.4 dbSUPER 0.4 +12.6 12645 2.6 KLF1 ZNF366 MYNN CRIPAK MAEA UVSSA CTBP1-AS2 CTBP1 CTBP1-AS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTBP1-AS on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTBP1-AS Gene

Genomic Locations for CTBP1-AS Gene
chr4:1,210,120-1,218,591
(GRCh38/hg38)
Size:
8,472 bases
Orientation:
Plus strand
chr4:1,203,908-1,212,379
(GRCh37/hg19)

Genomic View for CTBP1-AS Gene

Genes around CTBP1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTBP1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTBP1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTBP1-AS Gene

Proteins for CTBP1-AS Gene

Post-translational modifications for CTBP1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTBP1-AS Gene

Domains & Families for CTBP1-AS Gene

Gene Families for CTBP1-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CTBP1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTBP1-AS Gene

Function for CTBP1-AS Gene

Phenotypes From GWAS Catalog for CTBP1-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTBP1-AS Gene

Localization for CTBP1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTBP1-AS Gene

Pathways & Interactions for CTBP1-AS Gene

SuperPathways for CTBP1-AS Gene

No Data Available

Interacting Proteins for CTBP1-AS Gene

Gene Ontology (GO) - Biological Process for CTBP1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTBP1-AS Gene

Drugs & Compounds for CTBP1-AS Gene

No Compound Related Data Available

Transcripts for CTBP1-AS Gene

mRNA/cDNA for CTBP1-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTBP1-AS Gene

No ASD Table

Relevant External Links for CTBP1-AS Gene

GeneLoc Exon Structure for
CTBP1-AS
ECgene alternative splicing isoforms for
CTBP1-AS

Expression for CTBP1-AS Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTBP1-AS Gene

Orthologs for CTBP1-AS Gene

Evolution for CTBP1-AS Gene

ENSEMBL:
Gene Tree for CTBP1-AS (if available)
TreeFam:
Gene Tree for CTBP1-AS (if available)

No data available for Orthologs for CTBP1-AS Gene

Paralogs for CTBP1-AS Gene

No data available for Paralogs for CTBP1-AS Gene

Variants for CTBP1-AS Gene

Sequence variations from dbSNP and Humsavar for CTBP1-AS Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs869320802 pathogenic, not provided 1,213,028(+) G/A intron_variant
rs1000454929 -- 1,214,542(+) G/T intron_variant
rs1000470940 -- 1,209,602(+) C/T upstream_transcript_variant
rs1000670571 -- 1,217,683(+) C/T non_coding_transcript_variant
rs1000680832 -- 1,218,333(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CTBP1-AS Gene

Variant ID Type Subtype PubMed ID
dgv636n27 CNV loss 19166990
dgv8890n54 CNV loss 21841781
dgv8891n54 CNV loss 21841781
esv3569245 CNV loss 25503493
nsv508988 CNV insertion 20534489
nsv593278 CNV loss 21841781
nsv593281 CNV loss 21841781
nsv822425 CNV loss 20364138
nsv822430 CNV loss 20364138
nsv829835 CNV gain 17160897
nsv950331 CNV deletion 24416366

Additional Variant Information for CTBP1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTBP1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTBP1-AS Gene

Disorders for CTBP1-AS Gene

Additional Disease Information for CTBP1-AS

No disorders were found for CTBP1-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTBP1-AS Gene

Publications for CTBP1-AS Gene

  1. Androgen Receptor Coregulator CTBP1-AS Is Associated With Polycystic Ovary Syndrome in Chinese Women: A Preliminary Study. (PMID: 25552498) Liu Z … Qu Q (Reproductive sciences (Thousand Oaks, Calif.) 2015) 2 3 58
  2. Androgen-responsive long noncoding RNA CTBP1-AS promotes prostate cancer. (PMID: 23644382) Takayama K … Inoue S (The EMBO journal 2013) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for CTBP1-AS Gene

Sources for CTBP1-AS Gene

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