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Aliases for CTB-30L5.1 Gene

Subcategory (RNA class) for CTB-30L5.1 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for CTB-30L5.1 Gene

  • Uncharacterized CTB-30L5.1 3
  • CTB-111H14.1 3

External Ids for CTB-30L5.1 Gene

Summaries for CTB-30L5.1 Gene

GeneCards Summary for CTB-30L5.1 Gene

CTB-30L5.1 (Uncharacterized CTB-30L5.1) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTB-30L5.1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTB-30L5.1 Gene

Genomics for CTB-30L5.1 Gene

GeneHancer (GH) Regulatory Elements for CTB-30L5.1 Gene

Promoters and enhancers for CTB-30L5.1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I106610 Enhancer 0.8 ENCODE 0.8 +4.1 4114 2.1 FOXA2 ATF1 BMI1 FEZF1 BATF IRF4 RAD21 YY1 CBX5 SCRT2 CCDC71L CTB-30L5.1 ENSG00000267052 ENSG00000243797
GH07I106598 Promoter/Enhancer 1.4 Ensembl ENCODE 0.4 +16.9 16864 1.3 HDGF PKNOX1 ATF1 ARNT SIN3A IRF4 BRCA1 YY1 ETS1 ZNF143 ENSG00000267052 CCDC71L CTB-30L5.1 ENSG00000243797 LARP1BP2
GH07I106607 Enhancer 0.8 Ensembl ENCODE 0.4 +6.7 6737 2.4 HNRNPUL1 NFATC3 JUN JUND FOXK2 TARDBP IKZF1 NBN ZNF24 FOS HBP1 ENSG00000272072 COG5 CCDC71L ATXN7L1 CTB-30L5.1 ENSG00000267052 ENSG00000243797
GH07I106604 Enhancer 0.8 ENCODE 0.4 +11.0 11035 0.9 HDAC1 PKNOX1 ATF1 TAF9B BATF CHAMP1 ATF7 CEBPB ZEB2 ZNF592 ENSG00000267052 CTB-30L5.1 ENSG00000243797
GH07I106588 Enhancer 0.9 ENCODE 0.3 +25.8 25819 2.5 HDAC1 PKNOX1 ATF1 ZBTB40 CHAMP1 TCF12 ZNF766 GATA2 ETV6 ZEB2 CCDC71L ENSG00000272072 ENSG00000267052 CTB-30L5.1 ENSG00000243797 LARP1BP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTB-30L5.1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTB-30L5.1 Gene

Genomic Locations for CTB-30L5.1 Gene
chr7:106,570,755-106,615,753
(GRCh38/hg38)
Size:
44,999 bases
Orientation:
Minus strand

Genomic View for CTB-30L5.1 Gene

Genes around CTB-30L5.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTB-30L5.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTB-30L5.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTB-30L5.1 Gene

Proteins for CTB-30L5.1 Gene

Post-translational modifications for CTB-30L5.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTB-30L5.1 Gene

Domains & Families for CTB-30L5.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTB-30L5.1 Gene

Function for CTB-30L5.1 Gene

Phenotypes From GWAS Catalog for CTB-30L5.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTB-30L5.1 Gene

Localization for CTB-30L5.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTB-30L5.1 Gene

Pathways & Interactions for CTB-30L5.1 Gene

SuperPathways for CTB-30L5.1 Gene

No Data Available

Interacting Proteins for CTB-30L5.1 Gene

Gene Ontology (GO) - Biological Process for CTB-30L5.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTB-30L5.1 Gene

Drugs & Compounds for CTB-30L5.1 Gene

No Compound Related Data Available

Transcripts for CTB-30L5.1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for CTB-30L5.1 Gene

No ASD Table

Relevant External Links for CTB-30L5.1 Gene

GeneLoc Exon Structure for
CTB-30L5.1

No data available for mRNA/cDNA for CTB-30L5.1 Gene

Expression for CTB-30L5.1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTB-30L5.1 Gene

Orthologs for CTB-30L5.1 Gene

No data available for Orthologs and Evolution for CTB-30L5.1 Gene

Paralogs for CTB-30L5.1 Gene

No data available for Paralogs for CTB-30L5.1 Gene

Variants for CTB-30L5.1 Gene

Sequence variations from dbSNP and Humsavar for CTB-30L5.1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs869025233 uncertain-significance, Ductal breast carcinoma 106,660,419(-) T/G intron_variant
rs1000002800 -- 106,605,861(-) T/C intron_variant
rs1000024112 -- 106,640,746(-) G/A intron_variant
rs1000025252 -- 106,624,839(-) GTGGGTGGGTGG/GTGGGTGGGTGGGTGGGTGG intron_variant
rs1000037496 -- 106,607,352(-) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for CTB-30L5.1 Gene

Disorders for CTB-30L5.1 Gene

No disorders were found for CTB-30L5.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CTB-30L5.1 Gene

Publications for CTB-30L5.1 Gene

No publications were found for CTB-30L5.1 Gene.

Products for CTB-30L5.1 Gene

Sources for CTB-30L5.1 Gene

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