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Aliases for CTB-178M22.2 Gene

Subcategory (RNA class) for CTB-178M22.2 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CTB-178M22.2 Gene

  • Uncharacterized LOC101927862 3 5

External Ids for CTB-178M22.2 Gene

Previous GeneCards Identifiers for CTB-178M22.2 Gene

  • GC05M167658

Summaries for CTB-178M22.2 Gene

GeneCards Summary for CTB-178M22.2 Gene

CTB-178M22.2 (Uncharacterized LOC101927862) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CTB-178M22.2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTB-178M22.2 Gene

Genomics for CTB-178M22.2 Gene

GeneHancer (GH) Regulatory Elements for CTB-178M22.2 Gene

Promoters and enhancers for CTB-178M22.2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I168277 Enhancer 0.8 Ensembl ENCODE dbSUPER 10.1 -45.5 -45473 1.1 HNF4A RAD21 CTB-178M22.2 RARS WWC1
GH05I168226 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.8 +4.5 4465 1.8 JUN EBF1 ATF7 IKZF2 RUNX3 EGR2 SRF CBFB DPF2 ELF1 LOC105377708 CTB-178M22.2
GH05I168268 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.3 -37.7 -37715 2.3 ARID4B SIN3A DMAP1 ZNF2 ZNF48 TCF12 ZNF213 ARID2 ZNF143 RUNX3 RARS WWC1 CTB-178M22.2
GH05I168219 Enhancer 1 Ensembl ENCODE 0.4 +12.5 12480 0.6 ELF3 FOXA2 BATF IRF4 BRCA1 RAD21 RFX5 ETS1 ZNF143 BCLAF1 LOC105377708 CTB-178M22.2
GH05I168260 Enhancer 1 ENCODE dbSUPER 0.3 -28.5 -28540 1.2 ZNF146 ZNF449 FEZF1 ZNF2 HIC1 POLR2A ZNF302 ZSCAN5C ZNF391 ZBTB20 CTB-178M22.2 WWC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTB-178M22.2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTB-178M22.2 Gene

Genomic Locations for CTB-178M22.2 Gene
chr5:168,229,583-168,232,372
(GRCh38/hg38)
Size:
2,790 bases
Orientation:
Minus strand
chr5:167,656,588-167,659,362
(GRCh37/hg19)

Genomic View for CTB-178M22.2 Gene

Genes around CTB-178M22.2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTB-178M22.2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTB-178M22.2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTB-178M22.2 Gene

Proteins for CTB-178M22.2 Gene

Post-translational modifications for CTB-178M22.2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTB-178M22.2 Gene

Domains & Families for CTB-178M22.2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTB-178M22.2 Gene

Function for CTB-178M22.2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTB-178M22.2 Gene

Localization for CTB-178M22.2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTB-178M22.2 Gene

Pathways & Interactions for CTB-178M22.2 Gene

SuperPathways for CTB-178M22.2 Gene

No Data Available

Interacting Proteins for CTB-178M22.2 Gene

Gene Ontology (GO) - Biological Process for CTB-178M22.2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTB-178M22.2 Gene

Drugs & Compounds for CTB-178M22.2 Gene

No Compound Related Data Available

Transcripts for CTB-178M22.2 Gene

mRNA/cDNA for CTB-178M22.2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CTB-178M22.2 Gene

No ASD Table

Relevant External Links for CTB-178M22.2 Gene

GeneLoc Exon Structure for
CTB-178M22.2

Expression for CTB-178M22.2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTB-178M22.2 Gene

mRNA differential expression in normal tissues according to GTEx for CTB-178M22.2 Gene

This gene is overexpressed in Kidney - Cortex (x12.9).
genes like me logo Genes that share expression patterns with CTB-178M22.2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTB-178M22.2 Gene

Orthologs for CTB-178M22.2 Gene

Evolution for CTB-178M22.2 Gene

ENSEMBL:
Gene Tree for CTB-178M22.2 (if available)
TreeFam:
Gene Tree for CTB-178M22.2 (if available)

No data available for Orthologs for CTB-178M22.2 Gene

Paralogs for CTB-178M22.2 Gene

No data available for Paralogs for CTB-178M22.2 Gene

Variants for CTB-178M22.2 Gene

Sequence variations from dbSNP and Humsavar for CTB-178M22.2 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000882180 -- 168,231,249(-) C/T intron_variant
rs1000982783 -- 168,231,459(-) T/A intron_variant
rs1001139229 -- 168,231,660(-) G/A intron_variant
rs1001188434 -- 168,231,898(-) C/A intron_variant
rs1001654506 -- 168,231,918(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for CTB-178M22.2 Gene

Disorders for CTB-178M22.2 Gene

Additional Disease Information for CTB-178M22.2

No disorders were found for CTB-178M22.2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTB-178M22.2 Gene

Publications for CTB-178M22.2 Gene

No publications were found for CTB-178M22.2 Gene.

Products for CTB-178M22.2 Gene

Sources for CTB-178M22.2 Gene

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