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Aliases for CTAGE9 Gene

Aliases for CTAGE9 Gene

  • CTAGE Family Member 9 2 3 3 5
  • Protein CTAGE-9 3 4
  • Cutaneous T-Cell Lymphoma-Associated Antigen 9 3
  • CTAGE Family, Member 9 2

External Ids for CTAGE9 Gene

Previous GeneCards Identifiers for CTAGE9 Gene

  • GC06M132075
  • GC06M132030
  • GC07M143303

Summaries for CTAGE9 Gene

GeneCards Summary for CTAGE9 Gene

CTAGE9 (CTAGE Family Member 9) is a Protein Coding gene. An important paralog of this gene is CTAGE8.

Additional gene information for CTAGE9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTAGE9 Gene

Genomics for CTAGE9 Gene

GeneHancer (GH) Regulatory Elements for CTAGE9 Gene

Promoters and enhancers for CTAGE9 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J131753 Enhancer 1.1 ENCODE dbSUPER 0.3 -44.3 -44268 2.9 FOXA2 MLX ARID4B ZNF48 SLC30A9 ATF7 FOS NFKBIZ SP5 NFYC MED23 ENPP1 GC06M131781 CTAGE9
GH06J131764 Enhancer 1 ENCODE dbSUPER 0.2 -54.5 -54503 1.7 ELF3 FOXA2 MLX ARID4B RAD21 RARA ZNF614 CREM THAP11 MIXL1 LOC100421775 GC06M131781 CTAGE9
GH06J131727 Enhancer 0.5 dbSUPER 0.4 -18.1 -18120 2.5 FOXA2 RXRA HLF CEBPA BCL6 KDM1A ENPP3 OR2A4 CTAGE9 GC06M131781
GH06J131732 Enhancer 0.6 ENCODE dbSUPER 0.3 -22.6 -22602 1.5 SRF ZFHX2 EGR2 CTAGE9 GC06M131781 ENPP3
GH06J131730 Enhancer 0.4 dbSUPER 0.3 -20.4 -20445 1.3 ZNF316 MAFG MAFK ENPP3 CTAGE9 GC06M131781
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTAGE9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTAGE9 Gene

Genomic Locations for CTAGE9 Gene
2,577 bases
Minus strand

Genomic View for CTAGE9 Gene

Genes around CTAGE9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTAGE9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTAGE9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTAGE9 Gene

Proteins for CTAGE9 Gene

  • Protein details for CTAGE9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    cTAGE family member 9
    Protein Accession:

    Protein attributes for CTAGE9 Gene

    777 amino acids
    Molecular mass:
    87953 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CTAGE9 Gene

Post-translational modifications for CTAGE9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CTAGE9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CTAGE9 Gene

Domains & Families for CTAGE9 Gene

Gene Families for CTAGE9 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for CTAGE9 Gene


Suggested Antigen Peptide Sequences for CTAGE9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the cTAGE family.
  • Belongs to the cTAGE family.
genes like me logo Genes that share domains with CTAGE9: view

Function for CTAGE9 Gene

Gene Ontology (GO) - Molecular Function for CTAGE9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042954 lipoprotein transporter activity IBA --
genes like me logo Genes that share ontologies with CTAGE9: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CTAGE9

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTAGE9 Gene

Localization for CTAGE9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CTAGE9 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CTAGE9 gene
Compartment Confidence
nucleus 2
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1
cytosol 1

Gene Ontology (GO) - Cellular Components for CTAGE9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005789 endoplasmic reticulum membrane IBA --
GO:0016021 integral component of membrane IEA --
GO:0070971 endoplasmic reticulum exit site IBA --
genes like me logo Genes that share ontologies with CTAGE9: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for CTAGE9 Gene

Pathways & Interactions for CTAGE9 Gene

SuperPathways for CTAGE9 Gene

No Data Available

Interacting Proteins for CTAGE9 Gene

Gene Ontology (GO) - Biological Process for CTAGE9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006888 ER to Golgi vesicle-mediated transport IBA --
GO:0009306 protein secretion IBA --
GO:0035459 cargo loading into vesicle IBA --
genes like me logo Genes that share ontologies with CTAGE9: view

No data available for Pathways by source and SIGNOR curated interactions for CTAGE9 Gene

Drugs & Compounds for CTAGE9 Gene

No Compound Related Data Available

Transcripts for CTAGE9 Gene

mRNA/cDNA for CTAGE9 Gene

(1) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTAGE9 Gene

CTAGE family, member 9:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CTAGE9

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTAGE9 Gene

No ASD Table

Relevant External Links for CTAGE9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CTAGE9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTAGE9 Gene

mRNA differential expression in normal tissues according to GTEx for CTAGE9 Gene

This gene is overexpressed in Testis (x35.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CTAGE9 Gene

Protein tissue co-expression partners for CTAGE9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CTAGE9 Gene:


SOURCE GeneReport for Unigene cluster for CTAGE9 Gene:

genes like me logo Genes that share expression patterns with CTAGE9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTAGE9 Gene

Orthologs for CTAGE9 Gene

This gene was present in the common ancestor of animals.

Orthologs for CTAGE9 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia LOC470576 33
  • 94.66 (n)
(Bos Taurus)
Mammalia -- 34
  • 72 (a)
(Mus musculus)
Mammalia Ctage5 34
  • 66 (a)
(Canis familiaris)
Mammalia -- 34
  • 45 (a)
(Monodelphis domestica)
Mammalia -- 34
  • 34 (a)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 33 (a)
(Gallus gallus)
Aves -- 34
  • 30 (a)
(Anolis carolinensis)
Reptilia -- 34
  • 31 (a)
(Danio rerio)
Actinopterygii ctage5 34
  • 36 (a)
fruit fly
(Drosophila melanogaster)
Insecta Tango1 34
  • 9 (a)
Species where no ortholog for CTAGE9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CTAGE9 Gene

Gene Tree for CTAGE9 (if available)
Gene Tree for CTAGE9 (if available)

Paralogs for CTAGE9 Gene

Paralogs for CTAGE9 Gene

(6) SIMAP similar genes for CTAGE9 Gene using alignment to 1 proteins:

  • CTGE9_HUMAN Pseudogenes for CTAGE9 Gene

genes like me logo Genes that share paralogs with CTAGE9: view

Variants for CTAGE9 Gene

Sequence variations from dbSNP and Humsavar for CTAGE9 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1004057491 -- 131,708,866(-) C/G coding_sequence_variant, missense_variant
rs1008409859 -- 131,712,330(-) A/C upstream_transcript_variant
rs1008462519 -- 131,711,335(-) T/A upstream_transcript_variant
rs1024686606 -- 131,712,771(-) GT/ upstream_transcript_variant
rs1026620306 -- 131,712,548(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CTAGE9 Gene

Variant ID Type Subtype PubMed ID
dgv3658e59 CNV duplication 20981092
dgv88n68 CNV loss 17160897
esv24430 CNV gain+loss 19812545
nsv1139874 CNV duplication 24896259
nsv1153899 CNV duplication 26484159
nsv7968 CNV loss 18304495
nsv821228 CNV duplication 20802225
nsv981185 CNV duplication 23825009

Variation tolerance for CTAGE9 Gene

Gene Damage Index Score: 5.44; 71.41% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CTAGE9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CTAGE9 Gene

Disorders for CTAGE9 Gene

Additional Disease Information for CTAGE9

No disorders were found for CTAGE9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTAGE9 Gene

Publications for CTAGE9 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  2. cTAGE: a cutaneous T cell lymphoma associated antigen family with tumor-specific splicing. (PMID: 12839582) Usener D … Eichmüller S (The Journal of investigative dermatology 2003) 3 58
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 58
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 4 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CTAGE9 Gene

Sources for CTAGE9 Gene

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