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Aliases for CTAGE10P Gene

Aliases for CTAGE10P Gene

  • CTAGE Family Member 10, Pseudogene 2 3 5
  • CTAGE Family, Member 10, Pseudogene 2

External Ids for CTAGE10P Gene

Previous GeneCards Identifiers for CTAGE10P Gene

  • GC13P050466

Summaries for CTAGE10P Gene

GeneCards Summary for CTAGE10P Gene

CTAGE10P (CTAGE Family Member 10, Pseudogene) is a Pseudogene.

Additional gene information for CTAGE10P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CTAGE10P Gene

Genomics for CTAGE10P Gene

GeneHancer (GH) Regulatory Elements for CTAGE10P Gene

Promoters and enhancers for CTAGE10P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I050121 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 13.2 +236.3 236347 10.1 FEZF1 DMAP1 IRF4 ZNF143 SP3 NFYC MEF2D ZNF610 GLIS1 NBN DLEU2 ENSG00000274270 SETDB2 TRIM13 KCNRG DLEU1 RNASEH2B-AS1 CTAGE10P RNASEH2B EBPL
GH13I050075 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 13.3 +189.5 189532 9.1 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ENSG00000275559 TRIM13 SETDB2 CTAGE10P DLEU1 KCNRG EBPL ENSG00000277752 GC13P050084 ENSG00000276089
GH13I049934 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 6.9 +47.3 47344 5.8 HDGF PKNOX1 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 SPRYD7 TRIM13 KCNRG SETDB2 EBPL DLEU1 CTAGE10P GC13P049951 RNY4P9 GC13M049909
GH13I049995 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 6 +107.1 107093 4.4 SMAD1 ARID4B SIN3A DMAP1 ZBTB7B YY1 POLR2B ZNF766 ZNF213 ZNF207 TRIM13 SPRYD7 MIR3613 DLEU1 EBPL CTAGE10P RNASEH2B KCNRG DLEU2
GH13I049856 Enhancer 1.1 Ensembl ENCODE 5 -31.8 -31776 3.5 FOXA2 MLX ARID4B NEUROD1 SIN3A ETS1 YY1 ATF7 FOS RXRA EBPL SPRYD7 DLEU1 CTAGE10P TRIM13 RNY4P30 KPNA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CTAGE10P on UCSC Golden Path with GeneCards custom track

Genomic Locations for CTAGE10P Gene

Genomic Locations for CTAGE10P Gene
chr13:49,890,409-49,893,380
(GRCh38/hg38)
Size:
2,972 bases
Orientation:
Plus strand
chr13:50,464,545-50,467,516
(GRCh37/hg19)

Genomic View for CTAGE10P Gene

Genes around CTAGE10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CTAGE10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CTAGE10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CTAGE10P Gene

Proteins for CTAGE10P Gene

Post-translational modifications for CTAGE10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CTAGE10P Gene

Domains & Families for CTAGE10P Gene

Gene Families for CTAGE10P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CTAGE10P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CTAGE10P Gene

Function for CTAGE10P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CTAGE10P Gene

Localization for CTAGE10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CTAGE10P Gene

Pathways & Interactions for CTAGE10P Gene

SuperPathways for CTAGE10P Gene

No Data Available

Interacting Proteins for CTAGE10P Gene

Gene Ontology (GO) - Biological Process for CTAGE10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CTAGE10P Gene

Drugs & Compounds for CTAGE10P Gene

No Compound Related Data Available

Transcripts for CTAGE10P Gene

mRNA/cDNA for CTAGE10P Gene

(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CTAGE10P Gene

CTAGE family, member 10, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CTAGE10P Gene

No ASD Table

Relevant External Links for CTAGE10P Gene

GeneLoc Exon Structure for
CTAGE10P
ECgene alternative splicing isoforms for
CTAGE10P

Expression for CTAGE10P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CTAGE10P Gene

mRNA differential expression in normal tissues according to GTEx for CTAGE10P Gene

This gene is overexpressed in Testis (x47.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for CTAGE10P Gene



NURSA nuclear receptor signaling pathways regulating expression of CTAGE10P Gene:

CTAGE10P

SOURCE GeneReport for Unigene cluster for CTAGE10P Gene:

Hs.448219
genes like me logo Genes that share expression patterns with CTAGE10P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CTAGE10P Gene

Orthologs for CTAGE10P Gene

Evolution for CTAGE10P Gene

ENSEMBL:
Gene Tree for CTAGE10P (if available)
TreeFam:
Gene Tree for CTAGE10P (if available)

No data available for Orthologs for CTAGE10P Gene

Paralogs for CTAGE10P Gene

No data available for Paralogs for CTAGE10P Gene

Variants for CTAGE10P Gene

Sequence variations from dbSNP and Humsavar for CTAGE10P Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000280500 -- 49,890,221(+) G/A upstream_transcript_variant
rs1002838316 -- 49,892,167(+) CTTC/C non_coding_transcript_variant
rs1003612100 -- 49,893,098(+) C/G non_coding_transcript_variant
rs1004108101 -- 49,893,122(+) C/T non_coding_transcript_variant
rs1007077964 -- 49,889,026(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CTAGE10P Gene

Variant ID Type Subtype PubMed ID
nsv976113 CNV duplication 23825009

Additional Variant Information for CTAGE10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CTAGE10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CTAGE10P Gene

Disorders for CTAGE10P Gene

Additional Disease Information for CTAGE10P

No disorders were found for CTAGE10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CTAGE10P Gene

Publications for CTAGE10P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for CTAGE10P Gene

Sources for CTAGE10P Gene

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