Aliases for CT70 Gene

Subcategory (RNA class) for CT70 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for CT70 Gene

  • Cancer/Testis Associated Transcript 70 2 3 5
  • Cancer/Testis Antigen 70 2 3
  • HSALNG0073424 169
  • NONHSAG053099 94
  • Lnc-ABCA1-1 170
  • LeXis 3

External Ids for CT70 Gene

Summaries for CT70 Gene

GeneCards Summary for CT70 Gene

CT70 (Cancer/Testis Associated Transcript 70) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CT70 include Osteogenic Sarcoma.

Additional gene information for CT70 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CT70 Gene

Genomics for CT70 Gene

GeneHancer (GH) Regulatory Elements for CT70 Gene

Promoters and enhancers for CT70 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J104990 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 769.3 -0.5 -454 4.3 ZBTB6 POLR2A USF2 MYC L3MBTL2 RAD21 MAX TEAD4 SP1 CEBPG CT70 ABCA1 RF00017-7781 RF00017-7782
GH09J104989 Enhancer 0.3 ENCODE dbSUPER 750.6 +1.9 1929 0 CT70 RF00017-7781
GH09J105006 Enhancer 1 FANTOM5 ENCODE dbSUPER 18.3 -15.4 -15395 1.8 POLR2A MAX SP1 SMARCC1 CEBPB CHD2 JUN JUND EP300 SMC3 ABCA1 CT70 ENSG00000226334 FSD1L RF00017-7782 RF00017-7781
GH09J105043 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.3 -57.5 -57482 14.6 MYC RELA HLF SP1 MAFK BACH1 SMARCA4 PPARG TRIM24 ZNF644 ABCA1 CT70 ENSG00000226334 FSD1L ENSG00000228366 SLC44A1 lnc-ABCA1-10 RF00017-7782 RF00017-7781 ENSG00000286536
GH09J105063 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 6.1 -73.0 -72989 3 SIN3A FOXA1 MLX RBPJ POLR2A TCF7L2 USF2 NR2F1 NR2F6 HLF ABCA1 RALGAPA1P1 FKTN CT70 FSD1L lnc-ABCA1-10 LOC105376197 RF00017-7781 ENSG00000286536
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CT70 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CT70 Gene

Genomic Locations for CT70 Gene
chr9:104,970,593-104,991,818
(GRCh38/hg38)
Size:
21,226 bases
Orientation:
Minus strand
chr9:107,753,077-107,754,062
(GRCh37/hg19)
Size:
986 bases
Orientation:
Minus strand

Genomic View for CT70 Gene

Genes around CT70 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CT70 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CT70 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CT70 Gene

Proteins for CT70 Gene

No data available for DME Specific Peptides for CT70 Gene

Domains & Families for CT70 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CT70 Gene

Function for CT70 Gene

Phenotypes From GWAS Catalog for CT70 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CT70 Gene

Localization for CT70 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CT70 Gene

Pathways & Interactions for CT70 Gene

PathCards logo

SuperPathways for CT70 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CT70 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CT70 Gene

Drugs & Compounds for CT70 Gene

No Compound Related Data Available

Transcripts for CT70 Gene

mRNA/cDNA for CT70 Gene

(1) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(2) LncBook transcripts :
(3) LNCipedia transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CT70 Gene

No ASD Table

Relevant External Links for CT70 Gene

GeneLoc Exon Structure for
CT70
ECgene alternative splicing isoforms for
CT70

Expression for CT70 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CT70 Gene

Orthologs for CT70 Gene

Evolution for CT70 Gene

ENSEMBL:
Gene Tree for CT70 (if available)
TreeFam:
Gene Tree for CT70 (if available)

No data available for Orthologs for CT70 Gene

Paralogs for CT70 Gene

No data available for Paralogs for CT70 Gene

Variants for CT70 Gene

Sequence variations from dbSNP and Humsavar for CT70 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000188955 -- 104,971,648(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000348826 -- 104,977,625(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000416409 -- 104,984,193(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000498963 -- 104,978,827(-) C/G/T genic_downstream_transcript_variant, intron_variant
rs1000842106 -- 104,991,721(-) A/C/G non_coding_transcript_variant

Additional Variant Information for CT70 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CT70

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CT70 Gene

Disorders for CT70 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CT70 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
osteogenic sarcoma
  • osteosarcoma; osrc
- elite association - COSMIC cancer census association via MalaCards
Search CT70 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for CT70

genes like me logo Genes that share disorders with CT70: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CT70 Gene

Publications for CT70 Gene

  1. Long noncoding RNA LeXis promotes osteosarcoma growth through upregulation of CTNNB1 expression. (PMID: 28744406) Wang G … Yang C (American journal of cancer research 2017) 2 3 56
  2. Feedback modulation of cholesterol metabolism by the lipid-responsive non-coding RNA LeXis. (PMID: 27251289) Sallam T … Tontonoz P (Nature 2016) 2 3 56
  3. Identification of cancer/testis-antigen genes by massively parallel signature sequencing. (PMID: 15905330) Chen YT … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2005) 2 3 56

No data available for External Links for CT70 Gene

Products for CT70 Gene

Sources for CT70 Gene