Aliases for CT69 Gene

Subcategory (RNA class) for CT69 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CT69 Gene

  • Cancer/Testis Associated Transcript 69 2 3 5
  • Cancer/Testis Antigen 69 2 3
  • NONHSAG044892 92
  • HSALNG0053626 167
  • Lnc-SGK1-3 168
  • CT69 2

External Ids for CT69 Gene

Summaries for CT69 Gene

GeneCards Summary for CT69 Gene

CT69 (Cancer/Testis Associated Transcript 69) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CT69 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CT69 Gene

Genomics for CT69 Gene

GeneHancer (GH) Regulatory Elements for CT69 Gene

Promoters and enhancers for CT69 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J134524 Enhancer 0.9 FANTOM5 Ensembl 500.7 -0.4 -406 2.2 FOXA2 ZNF316 MAFF FOS MAFK CEBPB NFE2 JUND STAT3 NFE2L1 CT69 SGK1 LOC101928304 lnc-SGK1-6 ENSG00000232310
GH06J134169 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5 +350.0 350036 10.1 ZNF217 EP300 CTCF ZSCAN5C SIN3A NRF1 TCF12 POLR2G USF1 GTF2E2 SGK1 ENSG00000240056 CT69 lnc-TBPL1-6 lnc-SLC2A12-7 piR-46677-010
GH06J134182 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 5.3 +341.5 341478 2.6 ZSCAN5C TEAD4 ZIC2 ZNF263 NR3C1 STAT1 TCF7L2 FEZF1 ZNF24 MAZ SGK1 ENSG00000240056 CT69 lnc-TBPL1-6 RF01210-344 lnc-SLC2A12-9
GH06J134516 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +6.2 6164 4.4 ZBTB40 JUND FOS ZIC2 POLR2A TEAD1 ZNF341 FOXA2 NR2F2 ESRRA SGK1 CT69 RF01045-134 lnc-SGK1-6 ENSG00000232310
GH06J134529 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -6.8 -6806 4.6 EP300 ZNF217 TCF12 NCOR1 ZNF639 KDM6A CLOCK TCF7 FOXA1 TRIM28 SGK1 CT69 LOC101928304 lnc-SGK1-6 ENSG00000232310
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CT69 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CT69 Gene

Genomic Locations for CT69 Gene
chr6:134,428,239-134,524,495
(GRCh38/hg38)
Size:
96,257 bases
Orientation:
Minus strand

Genomic View for CT69 Gene

Genes around CT69 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CT69 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CT69 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CT69 Gene

Proteins for CT69 Gene

Post-translational modifications for CT69 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CT69 Gene

Domains & Families for CT69 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CT69 Gene

Function for CT69 Gene

Phenotypes From GWAS Catalog for CT69 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CT69 Gene

Localization for CT69 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CT69 Gene

Pathways & Interactions for CT69 Gene

PathCards logo

SuperPathways for CT69 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CT69 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CT69 Gene

Drugs & Compounds for CT69 Gene

No Compound Related Data Available

Transcripts for CT69 Gene

mRNA/cDNA for CT69 Gene

21 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
12 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
4 LncBook transcripts :
8 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CT69 Gene

No ASD Table

Relevant External Links for CT69 Gene

GeneLoc Exon Structure for
CT69

Expression for CT69 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CT69

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CT69 Gene

Orthologs for CT69 Gene

Evolution for CT69 Gene

ENSEMBL:
Gene Tree for CT69 (if available)
TreeFam:
Gene Tree for CT69 (if available)

No data available for Orthologs for CT69 Gene

Paralogs for CT69 Gene

No data available for Paralogs for CT69 Gene

Variants for CT69 Gene

Additional dbSNP identifiers (rs#s) for CT69 Gene

Structural Variations from Database of Genomic Variants (DGV) for CT69 Gene

Variant ID Type Subtype PubMed ID
esv1005098 CNV insertion 20482838
esv1057853 CNV insertion 17803354
esv1714351 CNV deletion 17803354
esv2732735 CNV deletion 23290073
esv2732736 CNV deletion 23290073
nsv349515 CNV insertion 16902084

Additional Variant Information for CT69 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CT69

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CT69 Gene

Disorders for CT69 Gene

Additional Disease Information for CT69

No disorders were found for CT69 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CT69 Gene

Publications for CT69 Gene

  1. The novelty of human cancer/testis antigen encoding genes in evolution. (PMID: 23691492) Dobrynin P … Kozlov AP (International journal of genomics 2013) 2 3 54
  2. Identification of cancer/testis-antigen genes by massively parallel signature sequencing. (PMID: 15905330) Chen YT … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2005) 2 3 54
  3. Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele. (PMID: 21768215) Tin A … CARe and CHARGE Consortia (Human molecular genetics 2011) 3 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for CT69 Gene

Products for CT69 Gene

Sources for CT69 Gene