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Aliases for CT45A6 Gene

Aliases for CT45A6 Gene

  • Cancer/Testis Antigen Family 45 Member A6 2 3 5
  • Cancer/Testis Antigen CT45-6 2 3
  • Cancer/Testis Antigen 45-6 3 4
  • Cancer/Testis Antigen 45A6 3 4
  • CT45-6 3 4
  • Cancer/Testis Antigen Family 45 Member A4/A6 3
  • Cancer/Testis Antigen 45A4/45A6 3
  • Cancer/Testis Antigen 45-4/6 3
  • CT45.6 3

External Ids for CT45A6 Gene

Previous GeneCards Identifiers for CT45A6 Gene

  • GC0XM134790
  • GC0XM134961

Summaries for CT45A6 Gene

GeneCards Summary for CT45A6 Gene

CT45A6 (Cancer/Testis Antigen Family 45 Member A6) is a Protein Coding gene. An important paralog of this gene is CT45A5.

Additional gene information for CT45A6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CT45A6 Gene

Genomics for CT45A6 Gene

GeneHancer (GH) Regulatory Elements for CT45A6 Gene

Promoters and enhancers for CT45A6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI135802 Promoter 0.5 EPDnew 550.4 +9.3 9313 0.1 CT45A6 CT45A5
GH0XI136192 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 20.1 -381.1 -381114 1.9 VEZF1 NFE2 HNF4A CT45A6 MAP7D3 FHL1 MMGT1 PIR45658
GH0XI135351 Enhancer 0.3 FANTOM5 2.7 +460.4 460404 0 CT45A6 ZNF449 PIR39715
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CT45A6 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CT45A6 gene promoter:

Genomic Locations for CT45A6 Gene

Genomic Locations for CT45A6 Gene
chrX:135,794,687-135,812,082
(GRCh38/hg38)
Size:
17,396 bases
Orientation:
Minus strand
chrX:134,962,849-134,971,244
(GRCh37/hg19)

Genomic View for CT45A6 Gene

Genes around CT45A6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CT45A6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CT45A6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CT45A6 Gene

Proteins for CT45A6 Gene

  • Protein details for CT45A6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DMU7-CT456_HUMAN
    Recommended name:
    Cancer/testis antigen family 45 member A6
    Protein Accession:
    P0DMU7
    Secondary Accessions:
    • Q8N7B7

    Protein attributes for CT45A6 Gene

    Size:
    189 amino acids
    Molecular mass:
    21232 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CT45A6 Gene

Post-translational modifications for CT45A6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CT45A6 Gene

No data available for DME Specific Peptides for CT45A6 Gene

Domains & Families for CT45A6 Gene

Gene Families for CT45A6 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CT45A6 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CT45A6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0DMU7

UniProtKB/Swiss-Prot:

CT456_HUMAN :
  • Belongs to the CT45 family.
Family:
  • Belongs to the CT45 family.
genes like me logo Genes that share domains with CT45A6: view

Function for CT45A6 Gene

genes like me logo Genes that share phenotypes with CT45A6: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CT45A6 Gene

Localization for CT45A6 Gene

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoli (2)
  • Nucleus (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CT45A6 Gene

Pathways & Interactions for CT45A6 Gene

SuperPathways for CT45A6 Gene

No Data Available

Interacting Proteins for CT45A6 Gene

Gene Ontology (GO) - Biological Process for CT45A6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CT45A6 Gene

Drugs & Compounds for CT45A6 Gene

No Compound Related Data Available

Transcripts for CT45A6 Gene

mRNA/cDNA for CT45A6 Gene

(3) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CT45A6 Gene

Cancer/testis antigen family 45, member A6:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CT45A6 Gene

No ASD Table

Relevant External Links for CT45A6 Gene

GeneLoc Exon Structure for
CT45A6
ECgene alternative splicing isoforms for
CT45A6

Expression for CT45A6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CT45A6 Gene

mRNA differential expression in normal tissues according to GTEx for CT45A6 Gene

This gene is overexpressed in Testis (x15.4), Brain - Nucleus accumbens (basal ganglia) (x7.8), Brain - Putamen (basal ganglia) (x6.6), and Brain - Hypothalamus (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of CT45A6 Gene:

CT45A6

SOURCE GeneReport for Unigene cluster for CT45A6 Gene:

Hs.676560

mRNA Expression by UniProt/SwissProt for CT45A6 Gene:

P0DMU7-CT456_HUMAN
Tissue specificity: Testis specific. Expressed in cancer cell lines.
genes like me logo Genes that share expression patterns with CT45A6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CT45A6 Gene

Orthologs for CT45A6 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for CT45A6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC465877 33
  • 98.41 (n)
Species where no ortholog for CT45A6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CT45A6 Gene

ENSEMBL:
Gene Tree for CT45A6 (if available)
TreeFam:
Gene Tree for CT45A6 (if available)

Paralogs for CT45A6 Gene

(6) SIMAP similar genes for CT45A6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CT45A6: view

Variants for CT45A6 Gene

Sequence variations from dbSNP and Humsavar for CT45A6 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1937734 -- 135,795,025(-) C/T intron_variant
rs199992182 -- 135,797,010(-) C/T intron_variant
rs200363724 -- 135,796,843(-) G/C coding_sequence_variant, missense_variant
rs201362669 -- 135,796,915(-) G/A intron_variant
rs201669761 -- 135,799,451(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CT45A6 Gene

Variant ID Type Subtype PubMed ID
dgv2438e212 CNV loss 25503493
dgv2439e212 CNV loss 25503493
dgv2440e212 CNV loss 25503493
dgv2441e212 CNV gain 25503493
dgv2442e212 CNV loss 25503493
dgv2443e212 CNV gain 25503493
dgv2444e212 CNV gain 25503493
dgv2445e212 CNV loss 25503493
dgv2446e212 CNV gain 25503493
dgv2448e212 CNV gain 25503493
dgv2450e212 CNV gain 25503493
dgv2451e212 CNV loss 25503493
dgv2452e212 CNV gain 25503493
dgv2453e212 CNV gain 25503493
dgv2454e212 CNV gain 25503493
dgv2455e212 CNV gain 25503493
dgv2456e212 CNV loss 25503493
dgv2457e212 CNV gain 25503493
dgv2458e212 CNV loss 25503493
dgv2459e212 CNV gain 25503493
dgv2460e212 CNV loss 25503493
dgv2461e212 CNV gain 25503493
dgv2462e212 CNV loss 25503493
dgv2463e212 CNV loss 25503493
dgv2464e212 CNV loss 25503493
dgv2465e212 CNV gain 25503493
dgv2466e212 CNV loss 25503493
dgv4297n106 CNV duplication 24896259
dgv4298n106 CNV duplication 24896259
dgv4618e59 CNV duplication 20981092
dgv4619e59 CNV duplication 20981092
esv1010013 CNV gain 20482838
esv1531072 CNV deletion 17803354
esv2740498 CNV deletion 23290073
esv2758895 CNV gain+loss 17122850
esv27752 CNV gain+loss 19812545
esv3326485 CNV duplication 20981092
esv3335233 CNV duplication 20981092
esv3345844 CNV duplication 20981092
esv3356616 CNV duplication 20981092
esv3364974 CNV duplication 20981092
esv3427308 CNV duplication 20981092
esv3574629 CNV loss 25503493
esv3574632 CNV loss 25503493
esv3574638 CNV loss 25503493
esv3574640 CNV loss 25503493
esv3574649 CNV loss 25503493
esv3574659 CNV loss 25503493
esv3574667 CNV loss 25503493
esv3574670 CNV loss 25503493
esv3574678 CNV loss 25503493
esv3574683 CNV loss 25503493
esv3574688 CNV loss 25503493
esv3574689 CNV loss 25503493
esv3574694 CNV loss 25503493
esv3577280 CNV gain 25503493
esv3577310 CNV gain 25503493
esv3577335 CNV gain 25503493
esv3577356 CNV gain 25503493
esv3577374 CNV gain 25503493
esv3577382 CNV gain 25503493
esv3577384 CNV gain 25503493
nsv1078132 CNV duplication 25765185
nsv1078133 CNV duplication 25765185
nsv1115292 CNV deletion 24896259
nsv1115909 CNV duplication 24896259
nsv1147050 CNV duplication 26484159
nsv1153158 CNV duplication 26484159
nsv469568 CNV gain 16826518
nsv471605 CNV gain+loss 15918152
nsv499485 CNV loss 21111241
nsv515174 CNV gain 21397061
nsv527747 CNV gain 19592680
nsv7107 CNV deletion 18451855
nsv7460 OTHER inversion 18451855

Variation tolerance for CT45A6 Gene

Gene Damage Index Score: 0.01; 0.17% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CT45A6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CT45A6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CT45A6 Gene

Disorders for CT45A6 Gene

Additional Disease Information for CT45A6

No disorders were found for CT45A6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CT45A6 Gene

Publications for CT45A6 Gene

  1. Identification of cancer/testis-antigen genes by massively parallel signature sequencing. (PMID: 15905330) Chen YT … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2005) 2 3 4 58
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58

Products for CT45A6 Gene

Sources for CT45A6 Gene

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