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Aliases for CSTF3-DT Gene

Subcategory (RNA class) for CSTF3-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CSTF3-DT Gene

  • CSTF3 Divergent Transcript 2 3
  • CSTF3 Antisense RNA 1 (Head To Head) 2 3 5
  • CSTF3-AS1 3 5

External Ids for CSTF3-DT Gene

Previous HGNC Symbols for CSTF3-DT Gene

  • CSTF3-AS1

Summaries for CSTF3-DT Gene

GeneCards Summary for CSTF3-DT Gene

CSTF3-DT (CSTF3 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CSTF3-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSTF3-DT Gene

Genomics for CSTF3-DT Gene

GeneHancer (GH) Regulatory Elements for CSTF3-DT Gene

Promoters and enhancers for CSTF3-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J033159 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.3 -341 3.4 HDGF PKNOX1 SMAD1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 HIPK3 CSTF3 CSTF3-DT NAT10 EIF3M QSER1 CAPRIN1 TCP11L1 PIGCP1 DEPDC7
GH11J033187 Enhancer 1 FANTOM5 Ensembl ENCODE 11.6 +26.5 26483 1.6 MITF USF1 PRDM6 BHLHE40 POU5F1 USF2 WT1 CSTF3 CSTF3-DT HIPK3 TCP11L1 DEPDC7 GC11M033190 ENSG00000206808 GC11M033171 GC11M032953
GH11J033133 Enhancer 0.8 Ensembl ENCODE 12.1 -27.0 -27004 2.5 NANOG RXRA REST YY1 SP1 ATF4 JUND POLR2A POU5F1 HNF4G CSTF3 CSTF3-DT TCP11L1 DEPDC7 PIR59958 GC11M032953
GH11J033329 Enhancer 0.8 ENCODE dbSUPER 11.2 +168.2 168243 0.1 CTCF ZNF654 RB1 TRIM22 REST RAD21 RFX5 CC2D1A GATA3 IKZF1 CSTF3 CSTF3-DT HIPK3 TCP11L1 KIAA1549L GC11P033247
GH11J033310 Enhancer 0.8 Ensembl ENCODE dbSUPER 10.8 +149.3 149344 0.8 GATA3 ZBTB33 HIPK3 CSTF3 CSTF3-DT TCP11L1 GC11P033247 KIAA1549L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CSTF3-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CSTF3-DT Gene

Genomic Locations for CSTF3-DT Gene
chr11:33,161,657-33,191,598
(GRCh38/hg38)
Size:
29,942 bases
Orientation:
Plus strand
chr11:33,183,203-33,213,144
(GRCh37/hg19)

Genomic View for CSTF3-DT Gene

Genes around CSTF3-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSTF3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSTF3-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSTF3-DT Gene

Function for CSTF3-DT Gene

Phenotypes From GWAS Catalog for CSTF3-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSTF3-DT Gene

Localization for CSTF3-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSTF3-DT Gene

Pathways & Interactions for CSTF3-DT Gene

SuperPathways for CSTF3-DT Gene

No Data Available

Interacting Proteins for CSTF3-DT Gene

Gene Ontology (GO) - Biological Process for CSTF3-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSTF3-DT Gene

Drugs & Compounds for CSTF3-DT Gene

No Compound Related Data Available

Transcripts for CSTF3-DT Gene

mRNA/cDNA for CSTF3-DT Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CSTF3-DT Gene

No ASD Table

Relevant External Links for CSTF3-DT Gene

GeneLoc Exon Structure for
CSTF3-DT
ECgene alternative splicing isoforms for
CSTF3-DT

Expression for CSTF3-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSTF3-DT Gene

Orthologs for CSTF3-DT Gene

Evolution for CSTF3-DT Gene

ENSEMBL:
Gene Tree for CSTF3-DT (if available)
TreeFam:
Gene Tree for CSTF3-DT (if available)

No data available for Orthologs for CSTF3-DT Gene

Paralogs for CSTF3-DT Gene

No data available for Paralogs for CSTF3-DT Gene

Variants for CSTF3-DT Gene

Sequence variations from dbSNP and Humsavar for CSTF3-DT Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000109402 -- 33,182,424(+) A/T intron_variant
rs1000135795 -- 33,188,994(+) T/C intron_variant
rs1000137998 -- 33,176,628(+) C/T intron_variant
rs1000143540 -- 33,184,962(+) A/G intron_variant
rs1000188701 -- 33,188,655(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CSTF3-DT Gene

Variant ID Type Subtype PubMed ID
dgv1093n100 CNV gain 25217958
dgv1742n54 CNV gain 21841781
esv2761660 CNV gain 21179565
esv2762904 CNV gain 21179565
esv3625871 CNV loss 21293372
nsv467786 CNV gain 19166990
nsv521130 CNV gain 19592680
nsv971999 CNV duplication 23825009

Additional Variant Information for CSTF3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSTF3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CSTF3-DT Gene

Disorders for CSTF3-DT Gene

Additional Disease Information for CSTF3-DT

No disorders were found for CSTF3-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSTF3-DT Gene

Publications for CSTF3-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for CSTF3-DT Gene

Sources for CSTF3-DT Gene

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