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Aliases for CST13P Gene

Aliases for CST13P Gene

  • Cystatin 13, Pseudogene 2 3 5
  • Cystatin T 2 3
  • Cystatin Pseudogene 3
  • CTES6 3
  • CSTT 3

External Ids for CST13P Gene

Summaries for CST13P Gene

GeneCards Summary for CST13P Gene

CST13P (Cystatin 13, Pseudogene) is a Pseudogene.

Additional gene information for CST13P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CST13P Gene

Genomics for CST13P Gene

GeneHancer (GH) Regulatory Elements for CST13P Gene

Promoters and enhancers for CST13P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I023533 Enhancer 0.4 ENCODE 0.4 +14.3 14349 0.6 SP1 POU5F1 EZH2 CST9 CSTL1 NAPB CST13P CST9LP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CST13P on UCSC Golden Path with GeneCards custom track

Genomic Locations for CST13P Gene

Genomic Locations for CST13P Gene
chr20:23,519,146-23,542,018
(GRCh38/hg38)
Size:
22,873 bases
Orientation:
Plus strand
chr20:23,499,783-23,522,655
(GRCh37/hg19)

Genomic View for CST13P Gene

Genes around CST13P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CST13P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CST13P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CST13P Gene

Proteins for CST13P Gene

Post-translational modifications for CST13P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CST13P Gene

Domains & Families for CST13P Gene

Gene Families for CST13P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CST13P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CST13P Gene

Function for CST13P Gene

Phenotypes From GWAS Catalog for CST13P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CST13P Gene

Localization for CST13P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CST13P Gene

Pathways & Interactions for CST13P Gene

SuperPathways for CST13P Gene

No Data Available

Interacting Proteins for CST13P Gene

Gene Ontology (GO) - Biological Process for CST13P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CST13P Gene

Drugs & Compounds for CST13P Gene

No Compound Related Data Available

Transcripts for CST13P Gene

mRNA/cDNA for CST13P Gene

(7) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CST13P Gene

Cystatin 13, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CST13P Gene

No ASD Table

Relevant External Links for CST13P Gene

GeneLoc Exon Structure for
CST13P
ECgene alternative splicing isoforms for
CST13P

Expression for CST13P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CST13P Gene

mRNA differential expression in normal tissues according to GTEx for CST13P Gene

This gene is overexpressed in Testis (x52.8).

NURSA nuclear receptor signaling pathways regulating expression of CST13P Gene:

CST13P

SOURCE GeneReport for Unigene cluster for CST13P Gene:

Hs.400007
genes like me logo Genes that share expression patterns with CST13P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CST13P Gene

Orthologs for CST13P Gene

Evolution for CST13P Gene

ENSEMBL:
Gene Tree for CST13P (if available)
TreeFam:
Gene Tree for CST13P (if available)

No data available for Orthologs for CST13P Gene

Paralogs for CST13P Gene

No data available for Paralogs for CST13P Gene

Variants for CST13P Gene

Sequence variations from dbSNP and Humsavar for CST13P Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000314877 -- 23,520,123(+) A/G intron_variant
rs1000363437 -- 23,526,029(+) C/A intron_variant
rs1000455148 -- 23,519,888(+) T/C intron_variant
rs1000667370 -- 23,520,353(+) A/T intron_variant
rs1000674606 -- 23,537,734(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CST13P Gene

Variant ID Type Subtype PubMed ID
nsv585723 CNV gain 21841781
nsv585722 CNV loss 21841781
nsv470544 CNV gain 18288195
nsv458949 CNV gain 19166990
nsv1065390 CNV loss 25217958
esv3645525 CNV gain 21293372
esv2722298 CNV deletion 23290073

Additional Variant Information for CST13P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CST13P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CST13P Gene

Disorders for CST13P Gene

Additional Disease Information for CST13P

No disorders were found for CST13P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CST13P Gene

Publications for CST13P Gene

  1. Evolution and human tissue expression of the Cres/Testatin subgroup genes, a reproductive tissue specific subgroup of the type 2 cystatins. (PMID: 20565543) Frygelius J … Töhönen V (Evolution & development 2010) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CST13P Gene

Sources for CST13P Gene

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