Aliases for CSRP3-AS1 Gene

Data sources for CSRP3-AS1 Gene:

RNA type for CSRP3-AS1 Gene

lncRNA

Aliases for CSRP3-AS1 Gene

External Ids for CSRP3-AS1 Gene

Previous GeneCards Identifiers for CSRP3-AS1 Gene

  • GC11P019298

Summaries for CSRP3-AS1 Gene

GeneCards Summary for CSRP3-AS1 Gene

CSRP3-AS1 (CSRP3 And E2F8 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CSRP3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CSRP3-AS1 Gene

Genomics for CSRP3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CSRP3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J019196 Enhancer 0.7 Ensembl ENCODE dbSUPER 250.7 +0.4 394 1.1 CEBPB ZNF512 PRDM10 CSRP3-AS1 IGSF22-AS1 CSRP3 ZDHHC13
GH11J019197 Enhancer 0.3 dbSUPER 250.7 +1.5 1504 0.4 ZNF366 ZNF512 CSRP3-AS1 CSRP3 ZDHHC13
GH11J019192 Enhancer 0.3 dbSUPER 250.7 -1.9 -1904 1 ZNF24 CSRP3-AS1 HSALNG0083043 CSRP3 ZDHHC13
GH11J019172 Enhancer 1 VISTA dbSUPER 12.3 -22.5 -22470 2.5 MYC IRF2 TAL1 STAT5A IRF9 TCF12 ATF4 NR2F6 TEAD4 MEIS2 ZDHHC13 GTF2H1 CSRP3-AS1 CSRP3 ENSG00000256282 piR-38579-009 HSALNG0083041 HSALNG0083042
GH11J019216 Enhancer 1 VISTA Ensembl ENCODE dbSUPER 12.7 +22.4 22393 3.7 ZNF600 CEBPB ATF4 ATF3 ATF2 ATF7 CEBPG E2F8 CSRP3-AS1 ZDHHC13 CSRP3 lnc-CSRP3-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CSRP3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CSRP3-AS1 Gene

Latest Assembly
chr11:19,196,233-19,312,856
(GRCh38/hg38)
Size:
116,624 bases
Orientation:
Plus strand

Previous Assembly
chr11:19,218,322-19,302,973
(GRCh37/hg19 by Ensembl)
Size:
84,652 bases
Orientation:
Plus strand

Genomic View for CSRP3-AS1 Gene

Genes around CSRP3-AS1 on UCSC Golden Path with GeneCards custom track
CSRP3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CSRP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSRP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSRP3-AS1 Gene

Proteins for CSRP3-AS1 Gene

Post-translational modifications for CSRP3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSRP3-AS1 Gene

Domains & Families for CSRP3-AS1 Gene

Gene Families for CSRP3-AS1 Gene

genes like me logo Genes that share domains with CSRP3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CSRP3-AS1 Gene

Function for CSRP3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSRP3-AS1 Gene

Localization for CSRP3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSRP3-AS1 Gene

Pathways & Interactions for CSRP3-AS1 Gene

PathCards logo

SuperPathways for CSRP3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CSRP3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CSRP3-AS1 Gene

Drugs & Compounds for CSRP3-AS1 Gene

No Compound Related Data Available

Transcripts for CSRP3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CSRP3-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002C7AEB_9606 lncRNA 516 3

Ensembl: ENST00000527978 (view in UCSC) ,

LncBook: HSALNT0172789,

NONCODE: NONHSAT018330.2,

URS00008BB101_9606 lncRNA 1460 3

LncBook: HSALNT0172795,

LNCipedia: lnc-ZDHHC13-1:2,

NONCODE: NONHSAT018332.2,

URS0000D56E78_9606 lncRNA 3402 2

LncBook: HSALNT0172790,

LNCipedia: lnc-ZDHHC13-1:4,

URS0000D59F27_9606 lncRNA 1958 2

LncBook: HSALNT0172791,

LNCipedia: lnc-ZDHHC13-1:5,

URS0001BDDFBC_9606 lncRNA 4128 1

LncBook: HSALNT0172792,

CSRP3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CSRP3-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CSRP3-AS1 Gene

No ASD Table

Relevant External Links for CSRP3-AS1 Gene

GeneLoc Exon Structure for
CSRP3-AS1

Expression for CSRP3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSRP3-AS1 Gene

Orthologs for CSRP3-AS1 Gene

Evolution for CSRP3-AS1 Gene

ENSEMBL:
Gene Tree for CSRP3-AS1 (if available)
TreeFam:
Gene Tree for CSRP3-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for CSRP3-AS1

No data available for Orthologs for CSRP3-AS1 Gene

Paralogs for CSRP3-AS1 Gene

No data available for Paralogs for CSRP3-AS1 Gene

Variants for CSRP3-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CSRP3-AS1 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
877187 Uncertain Significance: Familial hypertrophic cardiomyopathy 12 19,210,543(+) G/A
NC_000011.10:g.19210543G>A
rs1057523459 Likely Benign: not specified 19,201,979(+) C/A
NM_003476.5(CSRP3):c.-54G>T
FIVE_PRIME_UTR
rs1057523542 Likely Benign: not specified 19,202,151(+) C/T
NM_003476.4(CSRP3):c.-117-109G>A
rs1057524085 Likely Benign: not specified 19,202,161(+) C/G
NM_003476.4(CSRP3):c.-117-119G>C
rs112672382 Uncertain Significance: Familial hypertrophic cardiomyopathy 12 19,210,495(+) T/C
NM_003476.4(CSRP3):c.-163A>G

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CSRP3-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for CSRP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSRP3-AS1
Leiden Open Variation Database (LOVD)
CSRP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CSRP3-AS1 Gene

Disorders for CSRP3-AS1 Gene

Additional Disease Information for CSRP3-AS1

Open Targets Platform
Open Targets Platform

No disorders were found for CSRP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSRP3-AS1 Gene

Publications for CSRP3-AS1 Gene

No publications were found for CSRP3-AS1 Gene.

No data available for Mastermind for CSRP3-AS1 Gene

Products for CSRP3-AS1 Gene

Sources for CSRP3-AS1 Gene