Aliases for CSRP3-AS1 Gene

Subcategory (RNA class) for CSRP3-AS1 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for CSRP3-AS1 Gene

  • CSRP3 And E2F8 Antisense RNA 1 2 3 5

External Ids for CSRP3-AS1 Gene

Summaries for CSRP3-AS1 Gene

GeneCards Summary for CSRP3-AS1 Gene

CSRP3-AS1 (CSRP3 And E2F8 Antisense RNA 1) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CSRP3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CSRP3-AS1 Gene

Genomics for CSRP3-AS1 Gene

GeneHancer (GH) Regulatory Elements for CSRP3-AS1 Gene

Promoters and enhancers for CSRP3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J019172 Enhancer 1 VISTA dbSUPER 12.1 -123.4 -123411 2.5 TEAD4 CBFA2T2 TRIM24 PKNOX1 EP300 SOX6 ZNF766 E2F5 ZSCAN29 GABPA ZDHHC13 GTF2H1 CSRP3-AS1 CSRP3 ENSG00000256282 piR-38579-009 HSALNG0083042
GH11J019216 Enhancer 1 VISTA Ensembl ENCODE dbSUPER 12.6 -78.5 -78548 3.7 CEBPB NFYB GATA3 CEBPG ATF2 ATF7 E2F8 CSRP3-AS1 ZDHHC13 CSRP3 lnc-CSRP3-1 ENSG00000255308-001
GH11J019220 Enhancer 0.6 Ensembl ENCODE dbSUPER 11.3 -75.6 -75583 1.6 TCF7L2 CSRP3-AS1 ZDHHC13 lnc-CSRP3-1 CSRP3 ENSG00000255308-001
GH11J019163 Enhancer 0.6 Ensembl 11.2 -133.2 -133174 2 MAFK MLLT1 SP7 PKNOX1 ZNF316 NFE2 MAFG ZNF18 VEZF1 PRDM6 ZDHHC13 E2F8 CSRP3-AS1 HSALNG0083042 piR-38579-009
GH11J019072 Enhancer 0.5 ENCODE 10.3 -224.4 -224368 1.4 ZNF217 CREB1 CTBP1 KLF4 ESRRA POLR2A DPF2 SMARCE1 MRGPRX2 ZDHHC13 CSRP3-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CSRP3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CSRP3-AS1 Gene

Genomic Locations for CSRP3-AS1 Gene
chr11:19,297,174-19,310,713
(GRCh38/hg38)
Size:
13,540 bases
Orientation:
Plus strand
chr11:19,218,322-19,302,973
(GRCh37/hg19)
Size:
84,652 bases
Orientation:
Plus strand

Genomic View for CSRP3-AS1 Gene

Genes around CSRP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSRP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSRP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSRP3-AS1 Gene

Proteins for CSRP3-AS1 Gene

Post-translational modifications for CSRP3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSRP3-AS1 Gene

Domains & Families for CSRP3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CSRP3-AS1 Gene

Function for CSRP3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSRP3-AS1 Gene

Localization for CSRP3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSRP3-AS1 Gene

Pathways & Interactions for CSRP3-AS1 Gene

PathCards logo

SuperPathways for CSRP3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CSRP3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSRP3-AS1 Gene

Drugs & Compounds for CSRP3-AS1 Gene

No Compound Related Data Available

Transcripts for CSRP3-AS1 Gene

mRNA/cDNA for CSRP3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CSRP3-AS1 Gene

No ASD Table

Relevant External Links for CSRP3-AS1 Gene

GeneLoc Exon Structure for
CSRP3-AS1
ECgene alternative splicing isoforms for
CSRP3-AS1

Expression for CSRP3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSRP3-AS1 Gene

Orthologs for CSRP3-AS1 Gene

Evolution for CSRP3-AS1 Gene

ENSEMBL:
Gene Tree for CSRP3-AS1 (if available)
TreeFam:
Gene Tree for CSRP3-AS1 (if available)

No data available for Orthologs for CSRP3-AS1 Gene

Paralogs for CSRP3-AS1 Gene

No data available for Paralogs for CSRP3-AS1 Gene

Variants for CSRP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CSRP3-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs112672382 uncertain-significance, Dilated Cardiomyopathy, Dominant, Hypertrophic cardiomyopathy 19,210,495(+) T/C genic_upstream_transcript_variant, intron_variant
rs138573509 uncertain-significance, Dilated Cardiomyopathy, Dominant, Hypertrophic cardiomyopathy 19,210,493(+) C/ genic_upstream_transcript_variant, intron_variant
rs34865888 uncertain-significance, Hypertrophic cardiomyopathy, Dilated Cardiomyopathy, Dominant 19,210,494(+) TTTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTTTTTTTTT genic_upstream_transcript_variant, intron_variant
rs45498797 benign, uncertain-significance, not specified, Hypertrophic cardiomyopathy, Dilated Cardiomyopathy, Dominant, Cardiomyopathy 19,201,999(+) T/G genic_upstream_transcript_variant, intron_variant
rs569978006 uncertain-significance, Dilated Cardiomyopathy, Dominant, Hypertrophic cardiomyopathy 19,210,527(+) C/G/T genic_upstream_transcript_variant, intron_variant

Additional Variant Information for CSRP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSRP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CSRP3-AS1 Gene

Disorders for CSRP3-AS1 Gene

No disorders were found for CSRP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CSRP3-AS1 Gene

Publications for CSRP3-AS1 Gene

No publications were found for CSRP3-AS1 Gene.

No data available for External Links for CSRP3-AS1 Gene

Products for CSRP3-AS1 Gene

Sources for CSRP3-AS1 Gene