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Aliases for CSPG4P13 Gene

Aliases for CSPG4P13 Gene

  • Chondroitin Sulfate Proteoglycan 4 Pseudogene 13 2 3 5

External Ids for CSPG4P13 Gene

Previous GeneCards Identifiers for CSPG4P13 Gene

  • GC15P078171

Summaries for CSPG4P13 Gene

GeneCards Summary for CSPG4P13 Gene

CSPG4P13 (Chondroitin Sulfate Proteoglycan 4 Pseudogene 13) is a Pseudogene.

Additional gene information for CSPG4P13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSPG4P13 Gene

Genomics for CSPG4P13 Gene

GeneHancer (GH) Regulatory Elements for CSPG4P13 Gene

Promoters and enhancers for CSPG4P13 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I077878 Enhancer 0.6 Ensembl dbSUPER 550.8 +1.1 1063 1.8 ZNF341 KLF17 CSPG4P13 LOC645752 ENSG00000261244 DNM1P9
GH15I078373 Enhancer 1.1 Ensembl ENCODE 4.4 +495.9 495915 3.1 PKNOX1 ATF1 FOXA2 DMAP1 YY1 GLIS2 ZNF207 FOS ATF7 RXRA LOC105370912 DNAJA4 LOC645752 CSPG4P13 GC15P078347 GC15M078021
GH15I077159 Enhancer 0.9 Ensembl ENCODE 5.1 -717.6 -717567 2.4 NFIB ARID4B RAD21 CTBP1 HNF4G NR2F6 RUNX3 GATAD2A SMARCE1 RXRA PEAK1 CSPG4P13 ENSG00000261244 HMGN1P27 PIR35714 GC15M077111
GH15I077142 Enhancer 0.7 Ensembl ENCODE 5.1 -734.0 -733991 3.8 ELF3 JUND JUN ZNF10 HMG20A TSPAN3 PEAK1 LOC101929457 CSPG4P13 GC15M077111 PIR35714 HMGN1P27
GH15I078340 Enhancer 0.6 ENCODE 5.1 +462.9 462863 1.6 RING1 USF1 SIN3A ZMYM3 ELF1 HIC1 ZNF335 GATA3 CTBP2 ZFP36 CRABP1 ENSG00000279694 WDR61 ENSG00000259562 HMG20A ENSG00000260988 CSPG4P13 GC15M078021
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CSPG4P13 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CSPG4P13 Gene

Genomic Locations for CSPG4P13 Gene
chr15:77,878,638-77,904,674
(GRCh38/hg38)
Size:
26,037 bases
Orientation:
Plus strand
chr15:78,170,980-78,197,016
(GRCh37/hg19)

Genomic View for CSPG4P13 Gene

Genes around CSPG4P13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSPG4P13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSPG4P13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSPG4P13 Gene

Proteins for CSPG4P13 Gene

Post-translational modifications for CSPG4P13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSPG4P13 Gene

Domains & Families for CSPG4P13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSPG4P13 Gene

Function for CSPG4P13 Gene

Phenotypes From GWAS Catalog for CSPG4P13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSPG4P13 Gene

Localization for CSPG4P13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSPG4P13 Gene

Pathways & Interactions for CSPG4P13 Gene

SuperPathways for CSPG4P13 Gene

No Data Available

Interacting Proteins for CSPG4P13 Gene

Gene Ontology (GO) - Biological Process for CSPG4P13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSPG4P13 Gene

Drugs & Compounds for CSPG4P13 Gene

No Compound Related Data Available

Transcripts for CSPG4P13 Gene

mRNA/cDNA for CSPG4P13 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CSPG4P13 Gene

No ASD Table

Relevant External Links for CSPG4P13 Gene

GeneLoc Exon Structure for
CSPG4P13
ECgene alternative splicing isoforms for
CSPG4P13

Expression for CSPG4P13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CSPG4P13 Gene

mRNA differential expression in normal tissues according to GTEx for CSPG4P13 Gene

This gene is overexpressed in Artery - Tibial (x11.3) and Heart - Left Ventricle (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of CSPG4P13 Gene:

CSPG4P13
genes like me logo Genes that share expression patterns with CSPG4P13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSPG4P13 Gene

Orthologs for CSPG4P13 Gene

Evolution for CSPG4P13 Gene

ENSEMBL:
Gene Tree for CSPG4P13 (if available)
TreeFam:
Gene Tree for CSPG4P13 (if available)

No data available for Orthologs for CSPG4P13 Gene

Paralogs for CSPG4P13 Gene

No data available for Paralogs for CSPG4P13 Gene

Variants for CSPG4P13 Gene

Additional Variant Information for CSPG4P13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSPG4P13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CSPG4P13 Gene

Disorders for CSPG4P13 Gene

No disorders were found for CSPG4P13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CSPG4P13 Gene

Publications for CSPG4P13 Gene

No publications were found for CSPG4P13 Gene.

Products for CSPG4P13 Gene

Sources for CSPG4P13 Gene

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