Aliases for CSP1 Gene

Aliases for CSP1 Gene

  • CS Pseudogene 1 2 3 5
  • Citrate Synthase Pseudogene 3
  • CSP1 5

External Ids for CSP1 Gene

Previous GeneCards Identifiers for CSP1 Gene

  • GC02P063748

Summaries for CSP1 Gene

GeneCards Summary for CSP1 Gene

CSP1 (CS Pseudogene 1) is a Pseudogene.

Additional gene information for CSP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CSP1 Gene

Genomics for CSP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CSP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J063712 Enhancer 0.8 Ensembl ENCODE 0.7 -3.9 -3939 1 FOSL1 USF2 PRDM10 ATF1 TFDP1 L3MBTL2 ZNF639 NR2C1 PTTG1 ATF3 WDPCP UGP2 CSP1 piR-52368-070 lnc-VPS54-7 MDH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CSP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CSP1 Gene

Latest Assembly
chr2:63,717,005-63,717,899
(GRCh38/hg38)
Size:
895 bases
Orientation:
Plus strand

Previous Assembly
chr2:63,944,139-63,944,597
(GRCh37/hg19 by Entrez Gene)
Size:
459 bases
Orientation:
Plus strand

chr2:63,944,256-63,945,033
(GRCh37/hg19 by Ensembl)
Size:
778 bases
Orientation:
Plus strand

Genomic View for CSP1 Gene

Genes around CSP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSP1 Gene

Proteins for CSP1 Gene

Post-translational modifications for CSP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSP1 Gene

Domains & Families for CSP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CSP1 Gene

Function for CSP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSP1 Gene

Localization for CSP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSP1 Gene

Pathways & Interactions for CSP1 Gene

PathCards logo

SuperPathways for CSP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CSP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CSP1 Gene

Drugs & Compounds for CSP1 Gene

No Compound Related Data Available

Transcripts for CSP1 Gene

mRNA/cDNA for CSP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CSP1 Gene

No ASD Table

Relevant External Links for CSP1 Gene

GeneLoc Exon Structure for
CSP1

Expression for CSP1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSP1 Gene

Orthologs for CSP1 Gene

Evolution for CSP1 Gene

ENSEMBL:
Gene Tree for CSP1 (if available)
TreeFam:
Gene Tree for CSP1 (if available)

No data available for Orthologs for CSP1 Gene

Paralogs for CSP1 Gene

No data available for Paralogs for CSP1 Gene

Variants for CSP1 Gene

Additional Variant Information for CSP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CSP1 Gene

Disorders for CSP1 Gene

No disorders were found for CSP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CSP1 Gene

Publications for CSP1 Gene

No publications were found for CSP1 Gene.

No data available for Mastermind for CSP1 Gene

Products for CSP1 Gene

Sources for CSP1 Gene