Aliases for CSNK1G2-AS1 Gene

Subcategory (RNA class) for CSNK1G2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CSNK1G2-AS1 Gene

  • CSNK1G2 Antisense RNA 1 2 3 4 5
  • CSNK1G2-AS1 2 5 165
  • CSNK1G2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C19orf34 3 4
  • Chromosome 19 Open Reading Frame 34 2
  • Uncharacterized Protein CSNK1G2-AS1 4
  • CSNK1G2 Antisense Gene Protein 1 4
  • NONHSAG024405.2 91
  • HSALNG0141601 164
  • MGC39696 2

External Ids for CSNK1G2-AS1 Gene

Previous HGNC Symbols for CSNK1G2-AS1 Gene

  • C19orf34

Summaries for CSNK1G2-AS1 Gene

GeneCards Summary for CSNK1G2-AS1 Gene

CSNK1G2-AS1 (CSNK1G2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CSNK1G2-AS1 include Embryonal Testis Carcinoma.

Additional gene information for CSNK1G2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CSNK1G2-AS1 Gene

Genomics for CSNK1G2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CSNK1G2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J001954 Enhancer 0.5 Ensembl 600.7 +0.2 185 0.4 CREB1 ZNF629 ZNF692 PATZ1 ZXDB ATF2 ZBTB21 CSNK1G2-AS1 piR-57461-100 CSNK1G2 BTBD2
GH19J001939 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 8.4 +12.7 12685 5.8 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 RFX1 IKZF1 KDM1A CSNK1G2 LOC105372238 lnc-CSNK1G2-1-001 lnc-CSNK1G2-1-002 SF3A2 GRIN3B ZNF555 CIRBP LMNB2 TMEM259
GH19J001948 Promoter/Enhancer 0.9 Ensembl ENCODE dbSUPER 16 +5.8 5760 1 ZNF2 ZBTB33 POLR2A KLF1 BTBD2 CSNK1G2-AS1 piR-57461-100 CSNK1G2 lnc-CSNK1G2-1-002
GH19J001935 Enhancer 1.2 Ensembl ENCODE dbSUPER 7.3 +18.7 18681 1.8 ARHGAP35 ATF7 ZNF629 IKZF1 KDM1A FOXA1 RFX1 RXRB PATZ1 REST SF3A2 PWWP3A DAZAP1 LOC100288123 TMEM259 TCF3 CIRBP MKNK2 BTBD2 KLF16
GH19J001947 Enhancer 0.6 ENCODE dbSUPER 14.4 +6.6 6579 0.2 ZNF600 HIC1 POLR2A CSNK1G2-AS1 BTBD2 KLF16 piR-57461-100 CSNK1G2 lnc-CSNK1G2-1-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CSNK1G2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CSNK1G2-AS1 Gene

Genomic Locations for CSNK1G2-AS1 Gene
chr19:1,952,526-1,954,586
(GRCh38/hg38)
Size:
2,061 bases
Orientation:
Minus strand
chr19:1,952,526-1,954,585
(GRCh37/hg19)
Size:
2,060 bases
Orientation:
Minus strand

Genomic View for CSNK1G2-AS1 Gene

Genes around CSNK1G2-AS1 on UCSC Golden Path with GeneCards custom track
CSNK1G2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CSNK1G2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSNK1G2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSNK1G2-AS1 Gene

Proteins for CSNK1G2-AS1 Gene

  • Protein details for CSNK1G2-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NCQ2-CNAS1_HUMAN
    Recommended name:
    Uncharacterized protein CSNK1G2-AS1
    Protein Accession:
    Q8NCQ2

    Protein attributes for CSNK1G2-AS1 Gene

    Size:
    148 amino acids
    Molecular mass:
    16070 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CSNK1G2-AS1 Gene

Post-translational modifications for CSNK1G2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSNK1G2-AS1 Gene

Domains & Families for CSNK1G2-AS1 Gene

Gene Families for CSNK1G2-AS1 Gene

Protein Domains for CSNK1G2-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with CSNK1G2-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CSNK1G2-AS1 Gene

Function for CSNK1G2-AS1 Gene

Phenotypes From GWAS Catalog for CSNK1G2-AS1 Gene

genes like me logo Genes that share phenotypes with CSNK1G2-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CSNK1G2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSNK1G2-AS1 Gene

Localization for CSNK1G2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSNK1G2-AS1 Gene

Pathways & Interactions for CSNK1G2-AS1 Gene

PathCards logo

SuperPathways for CSNK1G2-AS1 Gene

No Data Available

Interacting Proteins for CSNK1G2-AS1 Gene

Selected Interacting proteins: Q8NCQ2-CNAS1_HUMAN for CSNK1G2-AS1 Gene via IID

Gene Ontology (GO) - Biological Process for CSNK1G2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSNK1G2-AS1 Gene

Drugs & Compounds for CSNK1G2-AS1 Gene

No Compound Related Data Available

Transcripts for CSNK1G2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CSNK1G2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CFAE_9606 lncRNA 1313 4

HGNC: 28604,

RefSeq: NR_033400,

LNCipedia: CSNK1G2-AS1:2,

NONCODE: NONHSAT060381.2,

URS00008BC743_9606 lncRNA 1252 3

Ensembl: ENST00000314315 (view in UCSC) ,

LNCipedia: CSNK1G2-AS1:3,

NONCODE: NONHSAT060382.2,

URS0000506B7B_9606 lncRNA 1288 2

Ensembl: ENST00000586395 (view in UCSC) ,

LNCipedia: CSNK1G2-AS1:1,

URS0000EBF80D_9606 lncRNA 1316 1

LncBook: HSALNT0289490,

CSNK1G2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CSNK1G2-AS1 Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CSNK1G2-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for CSNK1G2-AS1 Gene

No ASD Table

Relevant External Links for CSNK1G2-AS1 Gene

GeneLoc Exon Structure for
CSNK1G2-AS1

Expression for CSNK1G2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CSNK1G2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CSNK1G2-AS1 Gene

This gene is overexpressed in Testis (x36.0).

Protein differential expression in normal tissues from HIPED for CSNK1G2-AS1 Gene

This gene is overexpressed in Fetal Brain (40.9) and Islet of Langerhans (28.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CSNK1G2-AS1 Gene



Protein tissue co-expression partners for CSNK1G2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CSNK1G2-AS1

SOURCE GeneReport for Unigene cluster for CSNK1G2-AS1 Gene:

Hs.374717
genes like me logo Genes that share expression patterns with CSNK1G2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSNK1G2-AS1 Gene

Orthologs for CSNK1G2-AS1 Gene

Evolution for CSNK1G2-AS1 Gene

ENSEMBL:
Gene Tree for CSNK1G2-AS1 (if available)
TreeFam:
Gene Tree for CSNK1G2-AS1 (if available)

No data available for Orthologs for CSNK1G2-AS1 Gene

Paralogs for CSNK1G2-AS1 Gene

No data available for Paralogs for CSNK1G2-AS1 Gene

Variants for CSNK1G2-AS1 Gene

Additional dbSNP identifiers (rs#s) for CSNK1G2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CSNK1G2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv32942 CNV gain+loss 17666407
esv3643414 CNV gain 21293372
esv3893156 CNV loss 25118596
nsv1160561 CNV deletion 26073780
nsv470107 CNV loss 18288195
nsv953942 CNV deletion 24416366

Additional Variant Information for CSNK1G2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSNK1G2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CSNK1G2-AS1 Gene

Disorders for CSNK1G2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CSNK1G2-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
embryonal testis carcinoma
  • embryonal carcinoma of testis
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with CSNK1G2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CSNK1G2-AS1 Gene

Publications for CSNK1G2-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  5. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3

Products for CSNK1G2-AS1 Gene

Sources for CSNK1G2-AS1 Gene