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Aliases for CSN1S2AP Gene

Aliases for CSN1S2AP Gene

  • Casein Alpha S2-Like A, Pseudogene 2 3 5
  • Alpha-S2-Like Casein A 3
  • Casein Alpha S2-Like A 2
  • CSN1S2A 3

External Ids for CSN1S2AP Gene

Previous HGNC Symbols for CSN1S2AP Gene

  • CSN1S2A

Previous GeneCards Identifiers for CSN1S2AP Gene

  • GC04P070934
  • GC04P070935

Summaries for CSN1S2AP Gene

Entrez Gene Summary for CSN1S2AP Gene

  • This locus is the equivalent of casein gamma in mouse (GeneID 12993) and is found in a cluster of casein genes, similar to other mammals. In human, the potential open reading frame that matches the homologous protein from other species is prematurely truncated shortly after the signal peptide. Therefore, this locus appears to be a pseudogene. [provided by RefSeq, Jul 2008]

GeneCards Summary for CSN1S2AP Gene

CSN1S2AP (Casein Alpha S2-Like A, Pseudogene) is a Pseudogene.

Additional gene information for CSN1S2AP Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSN1S2AP Gene

Genomics for CSN1S2AP Gene

GeneHancer (GH) Regulatory Elements for CSN1S2AP Gene

Promoters and enhancers for CSN1S2AP Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J070050 Promoter 0.5 EPDnew 0.4 -17.0 -16967 0.1 HTN1 CSN1S2AP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CSN1S2AP on UCSC Golden Path with GeneCards custom track

Genomic Locations for CSN1S2AP Gene

Genomic Locations for CSN1S2AP Gene
17,905 bases
Plus strand
17,905 bases
Plus strand

Genomic View for CSN1S2AP Gene

Genes around CSN1S2AP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSN1S2AP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSN1S2AP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSN1S2AP Gene

Proteins for CSN1S2AP Gene

Post-translational modifications for CSN1S2AP Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSN1S2AP Gene

Domains & Families for CSN1S2AP Gene

Suggested Antigen Peptide Sequences for CSN1S2AP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for CSN1S2AP Gene

Function for CSN1S2AP Gene

genes like me logo Genes that share phenotypes with CSN1S2AP: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSN1S2AP Gene

Localization for CSN1S2AP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSN1S2AP Gene

Pathways & Interactions for CSN1S2AP Gene

SuperPathways for CSN1S2AP Gene

No Data Available

Interacting Proteins for CSN1S2AP Gene

Gene Ontology (GO) - Biological Process for CSN1S2AP Gene


No data available for Pathways by source and SIGNOR curated interactions for CSN1S2AP Gene

Drugs & Compounds for CSN1S2AP Gene

No Compound Related Data Available

Transcripts for CSN1S2AP Gene

mRNA/cDNA for CSN1S2AP Gene

(6) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CSN1S2AP Gene

Casein alpha s2-like A, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CSN1S2AP Gene

No ASD Table

Relevant External Links for CSN1S2AP Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CSN1S2AP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CSN1S2AP Gene

mRNA differential expression in normal tissues according to GTEx for CSN1S2AP Gene

This gene is overexpressed in Breast - Mammary Tissue (x33.0) and Brain - Hypothalamus (x16.2).

NURSA nuclear receptor signaling pathways regulating expression of CSN1S2AP Gene:


SOURCE GeneReport for Unigene cluster for CSN1S2AP Gene:

genes like me logo Genes that share expression patterns with CSN1S2AP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSN1S2AP Gene

Orthologs for CSN1S2AP Gene

Evolution for CSN1S2AP Gene

Gene Tree for CSN1S2AP (if available)
Gene Tree for CSN1S2AP (if available)

No data available for Orthologs for CSN1S2AP Gene

Paralogs for CSN1S2AP Gene

No data available for Paralogs for CSN1S2AP Gene

Variants for CSN1S2AP Gene

Sequence variations from dbSNP and Humsavar for CSN1S2AP Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000094722 -- 70,081,707(+) A/C intron_variant
rs1000190853 -- 70,068,272(+) G/A intron_variant
rs1000237929 -- 70,074,420(+) C/T intron_variant
rs1000429790 -- 70,080,198(+) A/G intron_variant
rs10004471 -- 70,084,595(+) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CSN1S2AP Gene

Variant ID Type Subtype PubMed ID
nsv1012495 CNV gain 25217958
nsv4378 CNV insertion 18451855
nsv594642 CNV loss 21841781

Additional Variant Information for CSN1S2AP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CSN1S2AP Gene

Disorders for CSN1S2AP Gene

Additional Disease Information for CSN1S2AP

No disorders were found for CSN1S2AP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSN1S2AP Gene

Publications for CSN1S2AP Gene

  1. Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins. (PMID: 13679022) Rijnkels M … Rosen JM (Genomics 2003) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. Multispecies comparison of the casein gene loci and evolution of casein gene family. (PMID: 12751895) Rijnkels M (Journal of mammary gland biology and neoplasia 2002) 3 58

Products for CSN1S2AP Gene

Sources for CSN1S2AP Gene

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