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Aliases for CSMD2-AS1 Gene

Subcategory (RNA class) for CSMD2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CSMD2-AS1 Gene

  • CSMD2 Antisense RNA 1 2 3 5

External Ids for CSMD2-AS1 Gene

Summaries for CSMD2-AS1 Gene

GeneCards Summary for CSMD2-AS1 Gene

CSMD2-AS1 (CSMD2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CSMD2-AS1 include Diffuse Large B-Cell Lymphoma.

Additional gene information for CSMD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSMD2-AS1 Gene

Genomics for CSMD2-AS1 Gene

GeneHancer (GH) Regulatory Elements for CSMD2-AS1 Gene

Promoters and enhancers for CSMD2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J033361 Enhancer 2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 14.6 -504.3 -504251 7 PKNOX1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 ZNF766 ZNF416 ZNF143 DEK ZBTB8A RBBP4 ZSCAN20 S100PBP BSDC1 PHC2 CSMD2-AS1 ZBTB8B CSMD2 ZBTB8OS
GH01J033903 Enhancer 0.6 FANTOM5 11.1 +34.5 34466 0.3 RXRA MAFG YY1 SP1 JUND ZNF316 ATF3 NFE2 HNF4A HMGB4 CSMD2-AS1 GC01M033889 GC01P033929 CSMD2
GH01J033864 Promoter 0.6 EPDnew 0.7 -4.9 -4893 0.1 ATF2 HMGB4 CSMD2-AS1 CSMD2
GH01J033876 Enhancer 0.4 ENCODE 0.4 +8.3 8297 1.2 SCRT2 ZFP36 CSMD2 CSMD2-AS1 GC01M033889
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CSMD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CSMD2-AS1 Gene

Genomic Locations for CSMD2-AS1 Gene
chr1:33,868,953-33,885,458
(GRCh38/hg38)
Size:
16,506 bases
Orientation:
Plus strand
chr1:34,334,554-34,351,059
(GRCh37/hg19)
Size:
16,506 bases
Orientation:
Plus strand

Genomic View for CSMD2-AS1 Gene

Genes around CSMD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSMD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSMD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSMD2-AS1 Gene

Proteins for CSMD2-AS1 Gene

Post-translational modifications for CSMD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSMD2-AS1 Gene

Domains & Families for CSMD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSMD2-AS1 Gene

Function for CSMD2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSMD2-AS1 Gene

Localization for CSMD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSMD2-AS1 Gene

Pathways & Interactions for CSMD2-AS1 Gene

SuperPathways for CSMD2-AS1 Gene

No Data Available

Interacting Proteins for CSMD2-AS1 Gene

Gene Ontology (GO) - Biological Process for CSMD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSMD2-AS1 Gene

Drugs & Compounds for CSMD2-AS1 Gene

No Compound Related Data Available

Transcripts for CSMD2-AS1 Gene

mRNA/cDNA for CSMD2-AS1 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(7) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CSMD2-AS1 Gene

No ASD Table

Relevant External Links for CSMD2-AS1 Gene

GeneLoc Exon Structure for
CSMD2-AS1
ECgene alternative splicing isoforms for
CSMD2-AS1

Expression for CSMD2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CSMD2-AS1 Gene

genes like me logo Genes that share expression patterns with CSMD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSMD2-AS1 Gene

Orthologs for CSMD2-AS1 Gene

Evolution for CSMD2-AS1 Gene

ENSEMBL:
Gene Tree for CSMD2-AS1 (if available)
TreeFam:
Gene Tree for CSMD2-AS1 (if available)

No data available for Orthologs for CSMD2-AS1 Gene

Paralogs for CSMD2-AS1 Gene

No data available for Paralogs for CSMD2-AS1 Gene

Variants for CSMD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CSMD2-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000075374 -- 33,882,641(+) C/A intron_variant
rs1000212418 -- 33,867,277(+) C/A upstream_transcript_variant
rs1000253865 -- 33,875,642(+) G/A intron_variant
rs1000281532 -- 33,875,932(+) G/A intron_variant
rs1000403211 -- 33,869,008(+) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CSMD2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv34112 CNV loss 18971310
esv3585686 CNV gain 21293372
esv3585694 CNV loss 21293372
nsv834624 CNV loss 17160897

Additional Variant Information for CSMD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSMD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CSMD2-AS1 Gene

Disorders for CSMD2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CSMD2-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
diffuse large b-cell lymphoma
  • large b-cell diffuse lymphoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CSMD2-AS1

genes like me logo Genes that share disorders with CSMD2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CSMD2-AS1 Gene

Publications for CSMD2-AS1 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CSMD2-AS1 Gene

Sources for CSMD2-AS1 Gene

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