Aliases for CSE1L-AS1 Gene

Subcategory (RNA class) for CSE1L-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CSE1L-AS1 Gene

  • CSE1L Antisense RNA 1 2 3 5
  • CSE1L-AS1 2 5 165
  • NONHSAG031970.2 91
  • NONHSAG031969.2 91
  • NONHSAG031971.2 91
  • HSALNG0130648 164

External Ids for CSE1L-AS1 Gene

Previous GeneCards Identifiers for CSE1L-AS1 Gene

  • GC20M049040

Summaries for CSE1L-AS1 Gene

GeneCards Summary for CSE1L-AS1 Gene

CSE1L-AS1 (CSE1L Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CSE1L-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CSE1L-AS1 Gene

Genomics for CSE1L-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CSE1L-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J049045 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.4 -417 4.2 SP1 HNRNPL CREB1 PRDM10 ZNF629 REST TFE3 NFKBIZ KDM1A POLR2A CSE1L CSE1L-AS1 DDX27 ARFGEF2 RF00017-3617 STAU1
GH20J048963 Enhancer 0.6 Ensembl ENCODE 10.9 +83.6 83583 1.4 CREB1 ATF7 ZNF629 RBM22 ATF2 piR-53177-034 ARFGEF2 CSE1L CSE1L-AS1 piR-43219
GH20J049051 Enhancer 1 Ensembl ENCODE 0.4 -7.7 -7717 6.8 GATAD2A REST SP1 POLR2A PKNOX1 CEBPA SCRT2 SOX13 ZNF316 YY1 ARFGEF2 STAU1 CSE1L CSE1L-AS1 RF00017-3617 DDX27
GH20J049038 Enhancer 0.9 ENCODE 0.4 +8.4 8391 0.5 LEF1 IKZF1 JUND MTA1 DPF2 HDAC1 SOX6 EP300 GTF2E2 HMBOX1 SNAP23P1 lnc-CSE1L-2 CSE1L CSE1L-AS1 RF00017-3616 ARFGEF2
GH20J049037 Promoter 0.6 Ensembl 0.4 +9.0 8983 0.2 GTF2E2 NR2C2 ZBTB11 RBM22 ZNF639 SNAP23P1 CSE1L CSE1L-AS1 RF00017-3616 ARFGEF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CSE1L-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CSE1L-AS1 Gene

Genomic Locations for CSE1L-AS1 Gene
chr20:49,032,624-49,046,684
(GRCh38/hg38)
Size:
14,061 bases
Orientation:
Minus strand

Genomic View for CSE1L-AS1 Gene

Genes around CSE1L-AS1 on UCSC Golden Path with GeneCards custom track
CSE1L-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CSE1L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSE1L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSE1L-AS1 Gene

Proteins for CSE1L-AS1 Gene

Post-translational modifications for CSE1L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSE1L-AS1 Gene

Domains & Families for CSE1L-AS1 Gene

Gene Families for CSE1L-AS1 Gene

genes like me logo Genes that share domains with CSE1L-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CSE1L-AS1 Gene

Function for CSE1L-AS1 Gene

Phenotypes From GWAS Catalog for CSE1L-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSE1L-AS1 Gene

Localization for CSE1L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSE1L-AS1 Gene

Pathways & Interactions for CSE1L-AS1 Gene

PathCards logo

SuperPathways for CSE1L-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CSE1L-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CSE1L-AS1 Gene

Drugs & Compounds for CSE1L-AS1 Gene

No Compound Related Data Available

Transcripts for CSE1L-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CSE1L-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B9BD_9606 lncRNA 568 3

HGNC: 51232,

RefSeq: NR_110624,

LNCipedia: CSE1L-AS1:1,

URS000022E754_9606 lncRNA 556 3

Ensembl: ENST00000417781 (view in UCSC) ,

LNCipedia: CSE1L-AS1:4,

NONCODE: NONHSAT080194.2,

URS0000386B04_9606 lncRNA 333 3

Ensembl: ENST00000428190 (view in UCSC) ,

LNCipedia: CSE1L-AS1:3,

NONCODE: NONHSAT080195.2,

URS000075A45D_9606 lncRNA 345 2

RefSeq: NR_110625,

LNCipedia: CSE1L-AS1:2,

URS0000EED77C_9606 lncRNA 676 1

Ensembl: ENST00000656931 (view in UCSC) ,

CSE1L-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CSE1L-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CSE1L-AS1 Gene

No ASD Table

Relevant External Links for CSE1L-AS1 Gene

GeneLoc Exon Structure for
CSE1L-AS1

Expression for CSE1L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CSE1L-AS1 Gene

genes like me logo Genes that share expression patterns with CSE1L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSE1L-AS1 Gene

Orthologs for CSE1L-AS1 Gene

Evolution for CSE1L-AS1 Gene

ENSEMBL:
Gene Tree for CSE1L-AS1 (if available)
TreeFam:
Gene Tree for CSE1L-AS1 (if available)

No data available for Orthologs for CSE1L-AS1 Gene

Paralogs for CSE1L-AS1 Gene

No data available for Paralogs for CSE1L-AS1 Gene

Variants for CSE1L-AS1 Gene

Additional dbSNP identifiers (rs#s) for CSE1L-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CSE1L-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1066050 CNV gain 25217958
nsv1067146 CNV loss 25217958

Additional Variant Information for CSE1L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSE1L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CSE1L-AS1 Gene

Disorders for CSE1L-AS1 Gene

No disorders were found for CSE1L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSE1L-AS1 Gene

Publications for CSE1L-AS1 Gene

No publications were found for CSE1L-AS1 Gene.

No data available for Mastermind for CSE1L-AS1 Gene

Products for CSE1L-AS1 Gene

Sources for CSE1L-AS1 Gene