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Aliases for CSAG4 Gene

Aliases for CSAG4 Gene

  • CSAG Family Member 4 (Pseudogene) 2 3 5
  • CSAG Family, Member 4 (Pseudogene) 2
  • CSAG Family, Member 4 2

External Ids for CSAG4 Gene

Previous GeneCards Identifiers for CSAG4 Gene

  • GC0XU900576
  • GC0XM151629
  • GC0XM151646
  • GC0XM151877
  • GC0XM151897
  • GC0XM151898
  • GC0XM151900
  • GC0XM151901
  • GC0XM151902

Summaries for CSAG4 Gene

GeneCards Summary for CSAG4 Gene

CSAG4 (CSAG Family Member 4 (Pseudogene)) is a Pseudogene.

Additional gene information for CSAG4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSAG4 Gene

Genomics for CSAG4 Gene

GeneHancer (GH) Regulatory Elements for CSAG4 Gene

Promoters and enhancers for CSAG4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI152733 Promoter 1.1 EPDnew 550.8 -0.1 -88 0.1 HDAC1 ATF1 TAF9B NFRKB ZBTB40 EGR1 ATF7 CREM USF2 REST CSAG1 CSAG4 MAGEA12 GC0XM152591
GH0XI152732 Promoter 0.8 EPDnew 550.8 -1.3 -1303 0.1 ZNF316 CEBPB MAFG EMSY CSAG1 CSAG4 MAGEA12 CSAG2 GC0XM152591
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CSAG4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CSAG4 Gene

Genomic Locations for CSAG4 Gene
chrX:152,733,827-152,740,985
(GRCh38/hg38)
Size:
7,159 bases
Orientation:
Plus strand
chrX:151,895,973-151,903,136
(GRCh37/hg19)

Genomic View for CSAG4 Gene

Genes around CSAG4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSAG4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSAG4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSAG4 Gene

Proteins for CSAG4 Gene

Post-translational modifications for CSAG4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CSAG4 Gene

Domains & Families for CSAG4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CSAG4 Gene

Function for CSAG4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CSAG4 Gene

Localization for CSAG4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CSAG4 Gene

Pathways & Interactions for CSAG4 Gene

SuperPathways for CSAG4 Gene

No Data Available

Interacting Proteins for CSAG4 Gene

Gene Ontology (GO) - Biological Process for CSAG4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CSAG4 Gene

Drugs & Compounds for CSAG4 Gene

No Compound Related Data Available

Transcripts for CSAG4 Gene

mRNA/cDNA for CSAG4 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CSAG4 Gene

No ASD Table

Relevant External Links for CSAG4 Gene

GeneLoc Exon Structure for
CSAG4
ECgene alternative splicing isoforms for
CSAG4

Expression for CSAG4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CSAG4 Gene

mRNA differential expression in normal tissues according to GTEx for CSAG4 Gene

This gene is overexpressed in Testis (x29.5).

NURSA nuclear receptor signaling pathways regulating expression of CSAG4 Gene:

CSAG4
genes like me logo Genes that share expression patterns with CSAG4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CSAG4 Gene

Orthologs for CSAG4 Gene

Evolution for CSAG4 Gene

ENSEMBL:
Gene Tree for CSAG4 (if available)
TreeFam:
Gene Tree for CSAG4 (if available)

No data available for Orthologs for CSAG4 Gene

Paralogs for CSAG4 Gene

No data available for Paralogs for CSAG4 Gene

Variants for CSAG4 Gene

Sequence variations from dbSNP and Humsavar for CSAG4 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs111248517 -- 152,738,500(+) A/G intron_variant
rs111344124 -- 152,737,395(+) A/G intron_variant
rs111942589 -- 152,733,616(+) G/T upstream_transcript_variant
rs111946653 -- 152,732,998(+) G/C upstream_transcript_variant
rs112142853 -- 152,732,819(+) T/C upstream_transcript_variant

Additional Variant Information for CSAG4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CSAG4

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CSAG4 Gene

Disorders for CSAG4 Gene

Additional Disease Information for CSAG4

No disorders were found for CSAG4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CSAG4 Gene

Publications for CSAG4 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CSAG4 Gene

Sources for CSAG4 Gene

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