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Aliases for CRYZL2P-SEC16B Gene

Quality Score for this RNA gene is

3

Aliases for CRYZL2P-SEC16B Gene

  • CRYZL2P-SEC16B Readthrough 2 3
  • AL359075.2 5

External Ids for CRYZL2P-SEC16B Gene

Summaries for CRYZL2P-SEC16B Gene

Entrez Gene Summary for CRYZL2P-SEC16B Gene

  • This locus represents naturally occurring read-through transcription between the neighboring CRYZL2P (crystallin zeta like 2 pseudogene) and SEC16B (SEC16 homolog B, endoplasmic reticulum export factor) genes on chromosome 1. The readthrough transcript encodes a protein that shares sequence identity with the downstream gene product. [provided by RefSeq, Oct 2017]

GeneCards Summary for CRYZL2P-SEC16B Gene

CRYZL2P-SEC16B (CRYZL2P-SEC16B Readthrough) is an RNA Gene.

Additional gene information for CRYZL2P-SEC16B Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CRYZL2P-SEC16B Gene

Genomics for CRYZL2P-SEC16B Gene

GeneHancer (GH) Regulatory Elements for CRYZL2P-SEC16B Gene

Promoters and enhancers for CRYZL2P-SEC16B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I178037 Promoter/Enhancer 1.3 Ensembl ENCODE 550.8 0.0 -29 1.9 ELF3 ARID4B SIN3A DMAP1 ZNF48 ZSCAN9 RAD21 ETS1 THAP11 MIXL1 CRYZL2P CRYZL2P-SEC16B RASAL2 GC01M178037
GH01I177983 Enhancer 1 Ensembl ENCODE 11.2 +54.0 53969 1.8 ATF1 ARNT ZNF76 SIN3A ZBTB40 YY1 ETS1 ZNF335 ZSCAN5C ZNF350 SEC16B CRYZL2P-SEC16B GC01M177906
GH01I178072 Enhancer 0.2 FANTOM5 11.4 -34.6 -34574 0.3 RASAL2 RASAL2-AS1 CRYZL2P-SEC16B SEC16B CRYZL2P GC01M178037
GH01I178051 Enhancer 1.1 Ensembl ENCODE 0.4 -14.6 -14635 3 FOXA2 ZFP64 ARID4B DMAP1 YY1 RXRA SP5 MXD4 PPARG KAT8 RASAL2 RASAL2-AS1 CRYZL2P CRYZL2P-SEC16B GC01M178037
GH01I178055 Enhancer 1.1 Ensembl ENCODE 0.4 -19.0 -19047 4.1 HDGF FOXA2 ARID4B DMAP1 IRF4 ZNF48 YY1 ZNF143 ATF7 DEK RASAL2 RASAL2-AS1 SEC16B CRYZL2P CRYZL2P-SEC16B GC01M178037
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CRYZL2P-SEC16B on UCSC Golden Path with GeneCards custom track

Genomic Locations for CRYZL2P-SEC16B Gene

Genomic Locations for CRYZL2P-SEC16B Gene
chr1:177,928,788-178,038,007
(GRCh38/hg38)
Size:
109,220 bases
Orientation:
Minus strand
chr1:177,897,923-178,007,142
(GRCh37/hg19)

Genomic View for CRYZL2P-SEC16B Gene

Genes around CRYZL2P-SEC16B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CRYZL2P-SEC16B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CRYZL2P-SEC16B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CRYZL2P-SEC16B Gene

Proteins for CRYZL2P-SEC16B Gene

Post-translational modifications for CRYZL2P-SEC16B Gene

No Post-translational modifications

Other Protein References for CRYZL2P-SEC16B Gene

REFSEQ proteins:

No data available for DME Specific Peptides for CRYZL2P-SEC16B Gene

Domains & Families for CRYZL2P-SEC16B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CRYZL2P-SEC16B Gene

Function for CRYZL2P-SEC16B Gene

Phenotypes From GWAS Catalog for CRYZL2P-SEC16B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CRYZL2P-SEC16B Gene

Localization for CRYZL2P-SEC16B Gene

Gene Ontology (GO) - Cellular Components for CRYZL2P-SEC16B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IEA --
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0005829 cytosol TAS --
GO:0043231 intracellular membrane-bounded organelle IDA 21768384
genes like me logo Genes that share ontologies with CRYZL2P-SEC16B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CRYZL2P-SEC16B Gene

Pathways & Interactions for CRYZL2P-SEC16B Gene

SuperPathways for CRYZL2P-SEC16B Gene

No Data Available

Interacting Proteins for CRYZL2P-SEC16B Gene

Gene Ontology (GO) - Biological Process for CRYZL2P-SEC16B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007029 endoplasmic reticulum organization IDA 21768384
GO:0007031 peroxisome organization IDA 21768384
GO:0010628 positive regulation of gene expression IMP 21768384
GO:0015031 protein transport IEA --
GO:0016559 peroxisome fission IMP 21768384
genes like me logo Genes that share ontologies with CRYZL2P-SEC16B: view

No data available for Pathways by source and SIGNOR curated interactions for CRYZL2P-SEC16B Gene

Drugs & Compounds for CRYZL2P-SEC16B Gene

No Compound Related Data Available

Transcripts for CRYZL2P-SEC16B Gene

mRNA/cDNA for CRYZL2P-SEC16B Gene

(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CRYZL2P-SEC16B Gene

No ASD Table

Relevant External Links for CRYZL2P-SEC16B Gene

GeneLoc Exon Structure for
CRYZL2P-SEC16B
ECgene alternative splicing isoforms for
CRYZL2P-SEC16B

Expression for CRYZL2P-SEC16B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CRYZL2P-SEC16B Gene

Orthologs for CRYZL2P-SEC16B Gene

Evolution for CRYZL2P-SEC16B Gene

ENSEMBL:
Gene Tree for CRYZL2P-SEC16B (if available)
TreeFam:
Gene Tree for CRYZL2P-SEC16B (if available)

No data available for Orthologs for CRYZL2P-SEC16B Gene

Paralogs for CRYZL2P-SEC16B Gene

No data available for Paralogs for CRYZL2P-SEC16B Gene

Variants for CRYZL2P-SEC16B Gene

Additional Variant Information for CRYZL2P-SEC16B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CRYZL2P-SEC16B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CRYZL2P-SEC16B Gene

Disorders for CRYZL2P-SEC16B Gene

No disorders were found for CRYZL2P-SEC16B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CRYZL2P-SEC16B Gene

Publications for CRYZL2P-SEC16B Gene

  1. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y … Zou H (Journal of proteomics 2014) 3 58
  2. Sec16B is involved in the endoplasmic reticulum export of the peroxisomal membrane biogenesis factor peroxin 16 (Pex16) in mammalian cells. (PMID: 21768384) Yonekawa S … Tani K (Proceedings of the National Academy of Sciences of the United States of America 2011) 3 58
  3. The full-ORF clone resource of the German cDNA Consortium. (PMID: 17974005) Bechtel S … Schupp I (BMC genomics 2007) 3 58
  4. Two mammalian Sec16 homologues have nonredundant functions in endoplasmic reticulum (ER) export and transitional ER organization. (PMID: 17192411) Bhattacharyya D … Glick BS (Molecular biology of the cell 2007) 3 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for CRYZL2P-SEC16B Gene

Sources for CRYZL2P-SEC16B Gene

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