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Aliases for CRTC3-AS1 Gene

Subcategory (RNA class) for CRTC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CRTC3-AS1 Gene

  • CRTC3 Antisense RNA 1 2 3 5

External Ids for CRTC3-AS1 Gene

Summaries for CRTC3-AS1 Gene

GeneCards Summary for CRTC3-AS1 Gene

CRTC3-AS1 (CRTC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CRTC3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CRTC3-AS1 Gene

Genomics for CRTC3-AS1 Gene

GeneHancer (GH) Regulatory Elements for CRTC3-AS1 Gene

Promoters and enhancers for CRTC3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J090716 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.2 -197 2.4 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B CRTC3-AS1 BLM PIR32733 LOC100631255 UNC45A ENSG00000259314 ENSG00000259212 ENSG00000200677 ENSG00000228998 GC15M090756
GH15J090685 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +30.1 30139 3.8 HDAC1 PKNOX1 SMAD1 RB1 STAT5A BATF IRF4 TCF12 ETV6 ATF7 GC15P090686 CRTC3-AS1
GH15J090647 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +67.8 67788 4.7 HDGF PKNOX1 SMAD1 ARNT YY1 POLR2B ZNF766 ZNF213 E2F8 ZNF207 ENSG00000278370 UNC45A ENSG00000259314 ENSG00000259212 LOC100631255 VPS33B BLM CRTC3 ENSG00000200677 ZNF774
GH15J090711 Enhancer 0.7 ENCODE 0.4 +5.6 5621 1.3 HDGF ZNF146 ZNF687 SMAD1 TRIM22 PAX8 EBF1 FEZF1 MEF2B ELF1 ENSG00000200677 FES MAN2A2 CRTC3 CRTC3-AS1 GC15P090686
GH15J090664 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.2 +51.7 51691 2.1 HDGF PKNOX1 CLOCK ATF1 SMAD1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ENSG00000259314 ENSG00000259212 UNC45A WDR93 NIFKP5 FES MAN2A2 BLM RCCD1 ENSG00000200677
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CRTC3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CRTC3-AS1 Gene

Genomic Locations for CRTC3-AS1 Gene
chr15:90,620,007-90,717,141
(GRCh38/hg38)
Size:
97,135 bases
Orientation:
Minus strand
chr15:91,163,239-91,260,372
(GRCh37/hg19)

Genomic View for CRTC3-AS1 Gene

Genes around CRTC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CRTC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CRTC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CRTC3-AS1 Gene

Proteins for CRTC3-AS1 Gene

Post-translational modifications for CRTC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CRTC3-AS1 Gene

Domains & Families for CRTC3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CRTC3-AS1 Gene

Function for CRTC3-AS1 Gene

Phenotypes From GWAS Catalog for CRTC3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CRTC3-AS1 Gene

Localization for CRTC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CRTC3-AS1 Gene

Pathways & Interactions for CRTC3-AS1 Gene

SuperPathways for CRTC3-AS1 Gene

No Data Available

Interacting Proteins for CRTC3-AS1 Gene

Gene Ontology (GO) - Biological Process for CRTC3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CRTC3-AS1 Gene

Drugs & Compounds for CRTC3-AS1 Gene

No Compound Related Data Available

Transcripts for CRTC3-AS1 Gene

mRNA/cDNA for CRTC3-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CRTC3-AS1 Gene

No ASD Table

Relevant External Links for CRTC3-AS1 Gene

GeneLoc Exon Structure for
CRTC3-AS1
ECgene alternative splicing isoforms for
CRTC3-AS1

Expression for CRTC3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CRTC3-AS1 Gene

genes like me logo Genes that share expression patterns with CRTC3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CRTC3-AS1 Gene

Orthologs for CRTC3-AS1 Gene

Evolution for CRTC3-AS1 Gene

ENSEMBL:
Gene Tree for CRTC3-AS1 (if available)
TreeFam:
Gene Tree for CRTC3-AS1 (if available)

No data available for Orthologs for CRTC3-AS1 Gene

Paralogs for CRTC3-AS1 Gene

No data available for Paralogs for CRTC3-AS1 Gene

Variants for CRTC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CRTC3-AS1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs193921108 uncertain-significance, Malignant tumor of prostate 90,638,566(-) C/A/G/T intron_variant
rs552669203 uncertain-significance, Bloom syndrome 90,717,375(-) G/T upstream_transcript_variant
rs577293550 uncertain-significance, Bloom syndrome 90,717,380(-) C/T upstream_transcript_variant
rs886051549 uncertain-significance, Bloom syndrome 90,717,416(-) C/T upstream_transcript_variant
rs547768822 benign, not specified 90,717,456(-) G/C upstream_transcript_variant

Additional Variant Information for CRTC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CRTC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CRTC3-AS1 Gene

Disorders for CRTC3-AS1 Gene

Additional Disease Information for CRTC3-AS1

No disorders were found for CRTC3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CRTC3-AS1 Gene

Publications for CRTC3-AS1 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58

Products for CRTC3-AS1 Gene

Sources for CRTC3-AS1 Gene

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