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Aliases for CROCCP3 Gene

Aliases for CROCCP3 Gene

  • Ciliary Rootlet Coiled-Coil, Rootletin Pseudogene 3 2 3 5
  • Ciliary Rootlet Coiled-Coil, Rootletin-Like 2 2 3
  • CROCCL2 3 4
  • Ciliary Rootlet Coiled-Coil Protein Pseudogene 3 4
  • DJ798A10.2 3
  • KIAA1922 4

External Ids for CROCCP3 Gene

Previous HGNC Symbols for CROCCP3 Gene

  • CROCCL2

Previous GeneCards Identifiers for CROCCP3 Gene

  • GC01M016794
  • GC01M015311

Summaries for CROCCP3 Gene

GeneCards Summary for CROCCP3 Gene

CROCCP3 (Ciliary Rootlet Coiled-Coil, Rootletin Pseudogene 3) is a Pseudogene.

Additional gene information for CROCCP3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CROCCP3 Gene

Genomics for CROCCP3 Gene

GeneHancer (GH) Regulatory Elements for CROCCP3 Gene

Promoters and enhancers for CROCCP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I016498 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 566 +0.2 186 2 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 GTF3C2 ZNF121 GLIS2 ZNF213 E2F8 CROCCP3 NECAP2 SPATA21 FAM131C LOC100421279 NBPF1 SRARP PIR40208 GC01M016499
GH01I016902 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 47.6 -405.8 -405793 4.9 ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ENSG00000272426 CROCC ZBTB17 CROCCP3 LINC01772 RPL22P3 ARHGEF19 MFAP2 NBPF1 NECAP2
GH01I015615 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 24.8 +880.9 880894 5.4 HDGF PKNOX1 CLOCK FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 DDI2 CROCCP3 NBPF1 LINC01772 PLEKHM2 ZBTB17 AGMAT SLC25A34 ENSG00000237938 EFHD2
GH01I016727 Enhancer 1.1 ENCODE dbSUPER 53.6 -228.5 -228544 0.2 GLI4 ZNF548 MCM3 SP3 JUNB ZC3H11A REST ZNF518A ZNF184 SMARCA4 TRG-CCC5-1 GC01P016729 CROCCP3 SPEN ENSG00000237938 CROCC LINC01772 ZBTB17 RPS16P1 RPL22P3
GH01I016642 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 31.6 -145.4 -145401 3.5 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZNF610 GC01P016642 MST1P2 ENSG00000283773 CROCC CROCCP3 LINC01772 NBPF1 CROCCP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CROCCP3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CROCCP3 Gene

Genomic Locations for CROCCP3 Gene
chr1:16,467,436-16,499,257
(GRCh38/hg38)
Size:
31,822 bases
Orientation:
Minus strand
chr1:16,793,931-16,825,752
(GRCh37/hg19)

Genomic View for CROCCP3 Gene

Genes around CROCCP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CROCCP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CROCCP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CROCCP3 Gene

Proteins for CROCCP3 Gene

  • Protein details for CROCCP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IVE0-CROL2_HUMAN
    Recommended name:
    Putative ciliary rootlet coiled-coil protein-like 2 protein
    Protein Accession:
    Q8IVE0
    Secondary Accessions:
    • Q96PW6

    Protein attributes for CROCCP3 Gene

    Size:
    287 amino acids
    Molecular mass:
    33334 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB67815.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for CROCCP3 Gene

Post-translational modifications for CROCCP3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CROCCP3 Gene

Domains & Families for CROCCP3 Gene

Protein Domains for CROCCP3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CROCCP3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IVE0

UniProtKB/Swiss-Prot:

CROL2_HUMAN :
  • Belongs to the rootletin family.
Family:
  • Belongs to the rootletin family.
genes like me logo Genes that share domains with CROCCP3: view

No data available for Gene Families for CROCCP3 Gene

Function for CROCCP3 Gene

Phenotypes From GWAS Catalog for CROCCP3 Gene

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CROCCP3 Gene

Localization for CROCCP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CROCCP3 Gene

Pathways & Interactions for CROCCP3 Gene

SuperPathways for CROCCP3 Gene

No Data Available

Interacting Proteins for CROCCP3 Gene

Gene Ontology (GO) - Biological Process for CROCCP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CROCCP3 Gene

Drugs & Compounds for CROCCP3 Gene

No Compound Related Data Available

Transcripts for CROCCP3 Gene

Unigene Clusters for CROCCP3 Gene

Ciliary rootlet coiled-coil, rootletin pseudogene 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CROCCP3 Gene

No ASD Table

Relevant External Links for CROCCP3 Gene

GeneLoc Exon Structure for
CROCCP3
ECgene alternative splicing isoforms for
CROCCP3

Expression for CROCCP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CROCCP3 Gene

mRNA differential expression in normal tissues according to GTEx for CROCCP3 Gene

This gene is overexpressed in Brain - Cerebellum (x4.9) and Brain - Cerebellar Hemisphere (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of CROCCP3 Gene:

CROCCP3

SOURCE GeneReport for Unigene cluster for CROCCP3 Gene:

Hs.597881
genes like me logo Genes that share expression patterns with CROCCP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CROCCP3 Gene

Orthologs for CROCCP3 Gene

Evolution for CROCCP3 Gene

ENSEMBL:
Gene Tree for CROCCP3 (if available)
TreeFam:
Gene Tree for CROCCP3 (if available)

No data available for Orthologs for CROCCP3 Gene

Paralogs for CROCCP3 Gene

(1) SIMAP similar genes for CROCCP3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CROCCP3: view

No data available for Paralogs for CROCCP3 Gene

Variants for CROCCP3 Gene

Sequence variations from dbSNP and Humsavar for CROCCP3 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000060626 -- 16,484,989(-) C/T intron_variant
rs1000241880 -- 16,476,068(-) T/A intron_variant
rs1000300972 -- 16,471,714(-) A/G intron_variant
rs1000437899 -- 16,476,190(-) G/A intron_variant
rs1000844539 -- 16,490,016(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CROCCP3 Gene

Variant ID Type Subtype PubMed ID
dgv10e201 CNV deletion 23290073
dgv1e203 CNV gain+loss 21179565
dgv1n68 CNV loss 17160897
dgv39n100 CNV gain 25217958
dgv40n100 CNV gain 25217958
esv2677321 CNV deletion 23128226
esv2678817 CNV deletion 23128226
esv2750816 CNV gain 17911159
esv2758925 CNV gain+loss 17122850
esv3585339 CNV loss 21293372
esv3585340 CNV loss 21293372
nsv1161242 CNV duplication 26073780
nsv159668 CNV deletion 16902084
nsv428421 CNV gain+loss 18775914
nsv436814 CNV insertion 17901297
nsv9324 CNV gain+loss 18304495
nsv945793 CNV duplication 23825009

Additional Variant Information for CROCCP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CROCCP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CROCCP3 Gene

Disorders for CROCCP3 Gene

Additional Disease Information for CROCCP3

No disorders were found for CROCCP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CROCCP3 Gene

Publications for CROCCP3 Gene

  1. Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. (PMID: 11572484) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2001) 2 3 4 58
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CROCCP3 Gene

Sources for CROCCP3 Gene

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