Aliases for CRIM1-DT Gene

Subcategory (RNA class) for CRIM1-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CRIM1-DT Gene

  • CRIM1 Divergent Transcript 2 3 5
  • NONHSAG027461 92
  • HSALNG0014194 167
  • Lnc-FEZ2-7 168
  • CRIM1-DT 2

External Ids for CRIM1-DT Gene

Summaries for CRIM1-DT Gene

GeneCards Summary for CRIM1-DT Gene

CRIM1-DT (CRIM1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CRIM1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CRIM1-DT Gene

Genomics for CRIM1-DT Gene

GeneHancer (GH) Regulatory Elements for CRIM1-DT Gene

Promoters and enhancers for CRIM1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J036353 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.1 -2.4 -2411 11.3 FOXK2 ZNF217 CTCF TCF12 POLR2G NCOR1 ZIC2 REST POLR2A ZBTB10 CRIM1 HSALNG0014195 CRIM1-DT FEZ2 lnc-VIT-3
GH02J036448 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -100.8 -100771 15.2 CTCF TCF12 USF1 NCOR1 JUND FOS REST HES1 RUNX1 EP300 CRIM1 CRIM1-DT HEATR5B RF00994-475 L13712-016
GH02J036437 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 11.6 -84.8 -84783 6.2 TCF12 JUND FOS REST RBM25 ESRRA KDM1A FOSL2 RBM22 ATF3 CRIM1 CRIM1-DT L13712-016 RF00994-475
GH02J036432 Enhancer 1 ENCODE dbSUPER 12.1 -78.2 -78239 2.5 EP300 TCF12 TCF7 RFX1 ZBTB25 TEAD1 TBX3 ZSCAN9 FOXA2 CEBPB CRIM1 CRIM1-DT L13712-016 lnc-VIT-3
GH02J036402 Enhancer 1.1 ENCODE dbSUPER 11.3 -53.2 -53236 13.1 ZNF217 ZSCAN5C TCF12 JUND TEAD4 FOS ZNF639 EP300 ZIC2 TCF7 CRIM1 ENSG00000272054 CRIM1-DT PRKD3 lnc-VIT-3 L13712-016
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CRIM1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CRIM1-DT Gene

Genomic Locations for CRIM1-DT Gene
chr2:36,352,722-36,355,620
(GRCh38/hg38)
Size:
2,899 bases
Orientation:
Minus strand
chr2:36,581,892-36,582,713
(GRCh37/hg19)
Size:
822 bases
Orientation:
Minus strand

Genomic View for CRIM1-DT Gene

Genes around CRIM1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CRIM1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CRIM1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CRIM1-DT Gene

Proteins for CRIM1-DT Gene

Post-translational modifications for CRIM1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CRIM1-DT Gene

Domains & Families for CRIM1-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CRIM1-DT Gene

Function for CRIM1-DT Gene

Phenotypes From GWAS Catalog for CRIM1-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CRIM1-DT Gene

Localization for CRIM1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CRIM1-DT Gene

Pathways & Interactions for CRIM1-DT Gene

PathCards logo

SuperPathways for CRIM1-DT Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CRIM1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CRIM1-DT Gene

Drugs & Compounds for CRIM1-DT Gene

No Compound Related Data Available

Transcripts for CRIM1-DT Gene

mRNA/cDNA for CRIM1-DT Gene

13 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CRIM1-DT Gene

No ASD Table

Relevant External Links for CRIM1-DT Gene

GeneLoc Exon Structure for
CRIM1-DT

Expression for CRIM1-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CRIM1-DT

SOURCE GeneReport for Unigene cluster for CRIM1-DT Gene:

Hs.432924
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CRIM1-DT Gene

Orthologs for CRIM1-DT Gene

Evolution for CRIM1-DT Gene

ENSEMBL:
Gene Tree for CRIM1-DT (if available)
TreeFam:
Gene Tree for CRIM1-DT (if available)

No data available for Orthologs for CRIM1-DT Gene

Paralogs for CRIM1-DT Gene

No data available for Paralogs for CRIM1-DT Gene

Variants for CRIM1-DT Gene

Additional dbSNP identifiers (rs#s) for CRIM1-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for CRIM1-DT Gene

Variant ID Type Subtype PubMed ID
esv2759040 CNV loss 17122850
nsv1071586 CNV deletion 25765185
nsv1126546 CNV deletion 24896259
nsv2680 CNV insertion 18451855

Additional Variant Information for CRIM1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CRIM1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CRIM1-DT Gene

Disorders for CRIM1-DT Gene

No disorders were found for CRIM1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CRIM1-DT Gene

Publications for CRIM1-DT Gene

  1. Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations. (PMID: 24529757) Xie T … Xu R (Neurobiology of aging 2014) 3 54
  2. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G … Peterson K (Molecular vision 2002) 3 54

Products for CRIM1-DT Gene

Sources for CRIM1-DT Gene