Aliases for CREB3L2-AS1 Gene

Subcategory (RNA class) for CREB3L2-AS1 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for CREB3L2-AS1 Gene

  • CREB3L2 Antisense RNA 1 2 3 5
  • Lnc-AKR1D1-2 168
  • CREB3L2-AS1 2

External Ids for CREB3L2-AS1 Gene

Summaries for CREB3L2-AS1 Gene

GeneCards Summary for CREB3L2-AS1 Gene

CREB3L2-AS1 (CREB3L2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CREB3L2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CREB3L2-AS1 Gene

Genomics for CREB3L2-AS1 Gene

GeneHancer (GH) Regulatory Elements for CREB3L2-AS1 Gene

Promoters and enhancers for CREB3L2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J137947 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.1 53 12.7 FOXK2 ZNF217 ZSCAN5C TCF12 POLR2G NCOR1 FOS ZNF639 ZNF10 ZIC2 CREB3L2-AS1 AKR1D1 CREB3L2 lnc-DGKI-1
GH07J137974 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.4 +31.5 31459 21 RXRA EP300 FOXK2 ZBTB40 ZNF217 ZSCAN5C SIN3A TCF12 POLR2G SP1 lnc-DGKI-1 TRIM24 CREB3L2 CREB3L2-AS1 RF00017-6662
GH07J137922 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.3 -29.0 -29047 3 FOS FOSL2 RBM22 FOSL1 EZH2 BATF MAFK JUND DPF2 JUNB AKR1D1 CREB3L2 CREB3L2-AS1 HSALNG0061651
GH07J137930 Enhancer 0.6 ENCODE dbSUPER 12.7 -22.5 -22537 1.5 JUND FOS RFX5 ZBTB33 POLR2A SIN3A CREB3L2-AS1 CREB3L2 AKR1D1 HSALNG0061651
GH07J137961 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 +11.7 11699 7.6 ZNF217 ZSCAN5C GTF2E2 PHB2 ZBTB5 ZBTB11 AFF1 TARDBP REST DNMT1 CREB3L2 AKR1D1 TRIM24 CREB3L2-AS1 lnc-DGKI-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CREB3L2-AS1 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for CREB3L2-AS1

Genomic Locations for CREB3L2-AS1 Gene

Genomic Locations for CREB3L2-AS1 Gene
chr7:137,953,348-137,957,966
(GRCh38/hg38)
Size:
4,619 bases
Orientation:
Plus strand
chr7:137,638,094-137,642,712
(GRCh37/hg19)
Size:
4,619 bases
Orientation:
Plus strand

Genomic View for CREB3L2-AS1 Gene

Genes around CREB3L2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CREB3L2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CREB3L2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CREB3L2-AS1 Gene

Proteins for CREB3L2-AS1 Gene

Post-translational modifications for CREB3L2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CREB3L2-AS1 Gene

Domains & Families for CREB3L2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CREB3L2-AS1 Gene

Function for CREB3L2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CREB3L2-AS1 Gene

Localization for CREB3L2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CREB3L2-AS1 Gene

Pathways & Interactions for CREB3L2-AS1 Gene

PathCards logo

SuperPathways for CREB3L2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CREB3L2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CREB3L2-AS1 Gene

Drugs & Compounds for CREB3L2-AS1 Gene

No Compound Related Data Available

Transcripts for CREB3L2-AS1 Gene

mRNA/cDNA for CREB3L2-AS1 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LNCipedia transcripts :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CREB3L2-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for CREB3L2-AS1 Gene

No ASD Table

Relevant External Links for CREB3L2-AS1 Gene

GeneLoc Exon Structure for
CREB3L2-AS1

Expression for CREB3L2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CREB3L2-AS1

SOURCE GeneReport for Unigene cluster for CREB3L2-AS1 Gene:

Hs.712161
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CREB3L2-AS1 Gene

Orthologs for CREB3L2-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for CREB3L2-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC101059382 30
  • 99.04 (n)
Species where no ortholog for CREB3L2-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CREB3L2-AS1 Gene

ENSEMBL:
Gene Tree for CREB3L2-AS1 (if available)
TreeFam:
Gene Tree for CREB3L2-AS1 (if available)

Paralogs for CREB3L2-AS1 Gene

No data available for Paralogs for CREB3L2-AS1 Gene

Variants for CREB3L2-AS1 Gene

Additional dbSNP identifiers (rs#s) for CREB3L2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CREB3L2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv33947 CNV gain 17666407
nsv518070 CNV gain 19592680
nsv831150 CNV gain+loss 17160897

Additional Variant Information for CREB3L2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CREB3L2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CREB3L2-AS1 Gene

Disorders for CREB3L2-AS1 Gene

No disorders were found for CREB3L2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CREB3L2-AS1 Gene

Publications for CREB3L2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for CREB3L2-AS1 Gene

Products for CREB3L2-AS1 Gene

Sources for CREB3L2-AS1 Gene