Aliases for CPVL-AS1 Gene

Subcategory (RNA class) for CPVL-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for CPVL-AS1 Gene

  • CPVL Antisense RNA 1 2 3
  • Novel Transcript 5
  • HSALNG0056944 169
  • NONHSAG047229 94
  • AC005162.1 5
  • Lnc-CHN2-1 170

External Ids for CPVL-AS1 Gene

Summaries for CPVL-AS1 Gene

GeneCards Summary for CPVL-AS1 Gene

CPVL-AS1 (CPVL Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CPVL-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CPVL-AS1 Gene

Genomics for CPVL-AS1 Gene

GeneHancer (GH) Regulatory Elements for CPVL-AS1 Gene

Promoters and enhancers for CPVL-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J029080 Enhancer 0.2 Ensembl 750.6 +0.7 717 0.8 CPVL-AS1 CPVL LOC100506497 RF00017-6094
GH07J029078 Enhancer 0.2 Ensembl 750.6 -1.7 -1683 0.4 CPVL-AS1 CPVL RF00017-6093
GH07J028953 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas 11.8 -123.8 -123834 6.5 CTCF RBPJ NR2F1 MIXL1 RAD21 NFIB SP1 ELF3 AHR TFE3 ENSG00000228421 TRIL CPVL-AS1 ENSG00000233517 CHN2 CPVL lnc-CREB5-3 piR-39876
GH07J029228 Enhancer 1.2 FANTOM5 Ensembl ENCODE 9.7 +148.8 148764 1.5 LCORL FOXA1 RBPJ NR2F1 NR2F6 CREB1 MIXL1 RAD21 RERE ELF3 CHN2 ENSG00000235669 CPVL CPVL-AS1 L13714-412 lnc-PRR15-6 ENSG00000285162
GH07J029099 Enhancer 1.1 Ensembl ENCODE 11 +21.5 21517 4 CTCF LCORL MLX RBPJ TCF7L2 NR2F1 ATF1 NR2F6 ZNF217 CREB1 CPVL CHN2 CPVL-AS1 ENSG00000233517 RF00017-6094 ENSG00000285412
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CPVL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CPVL-AS1 Gene

Genomic Locations for CPVL-AS1 Gene
chr7:29,080,284-29,082,667
(GRCh38/hg38)
Size:
2,384 bases
Orientation:
Plus strand
chr7:29,119,900-29,122,143
(GRCh37/hg19)
Size:
2,244 bases
Orientation:
Plus strand

Genomic View for CPVL-AS1 Gene

Genes around CPVL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPVL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPVL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPVL-AS1 Gene

Proteins for CPVL-AS1 Gene

Post-translational modifications for CPVL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CPVL-AS1 Gene

Domains & Families for CPVL-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CPVL-AS1 Gene

Function for CPVL-AS1 Gene

Phenotypes From GWAS Catalog for CPVL-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CPVL-AS1 Gene

Localization for CPVL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CPVL-AS1 Gene

Pathways & Interactions for CPVL-AS1 Gene

PathCards logo

SuperPathways for CPVL-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CPVL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CPVL-AS1 Gene

Drugs & Compounds for CPVL-AS1 Gene

No Compound Related Data Available

Transcripts for CPVL-AS1 Gene

mRNA/cDNA for CPVL-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(3) NONCODE transcripts :
(3) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CPVL-AS1 Gene

No ASD Table

Relevant External Links for CPVL-AS1 Gene

GeneLoc Exon Structure for
CPVL-AS1
ECgene alternative splicing isoforms for
CPVL-AS1

Expression for CPVL-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CPVL-AS1 Gene

Orthologs for CPVL-AS1 Gene

Evolution for CPVL-AS1 Gene

ENSEMBL:
Gene Tree for CPVL-AS1 (if available)
TreeFam:
Gene Tree for CPVL-AS1 (if available)

No data available for Orthologs for CPVL-AS1 Gene

Paralogs for CPVL-AS1 Gene

No data available for Paralogs for CPVL-AS1 Gene

Variants for CPVL-AS1 Gene

Sequence variations from dbSNP and Humsavar for CPVL-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000796456 -- 29,082,430(+) T/C non_coding_transcript_variant
rs1001231030 -- 29,078,645(+) T/C upstream_transcript_variant
rs1001415360 -- 29,080,014(+) G/A/C upstream_transcript_variant
rs1003078840 -- 29,082,775(+) G/A downstream_transcript_variant
rs1003131577 -- 29,078,500(+) T/C upstream_transcript_variant

Additional Variant Information for CPVL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPVL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CPVL-AS1 Gene

Disorders for CPVL-AS1 Gene

No disorders were found for CPVL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CPVL-AS1 Gene

Publications for CPVL-AS1 Gene

No publications were found for CPVL-AS1 Gene.

No data available for External Links for CPVL-AS1 Gene

Products for CPVL-AS1 Gene

Sources for CPVL-AS1 Gene