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The mitochondrial oxidation of long-chain fatty acids is initiated by the sequential action of carnitine palmitoyltransferase I (which is located in the outer membrane and is detergent-labile) and carnitine palmitoyltransferase II (which is located in the inner membrane and is detergent-stable), together with a carnitine-acylcarnitine translocase. CPT I is the key enzyme in the... See more...
Aliases for CPT1A Gene
Aliases for CPT1A Gene
External Ids for CPT1A Gene
- HGNC: 2328
- NCBI Entrez Gene: 1374
- Ensembl: ENSG00000110090
- OMIM®: 600528
- UniProtKB/Swiss-Prot: P50416
Previous HGNC Symbols for CPT1A Gene
- CPT1
Previous GeneCards Identifiers for CPT1A Gene
- GC11M071048
- GC11M070218
- GC11M068772
- GC11M068300
- GC11M068279
- GC11M068524
- GC11M064859
Summaries for CPT1A Gene
-
The mitochondrial oxidation of long-chain fatty acids is initiated by the sequential action of carnitine palmitoyltransferase I (which is located in the outer membrane and is detergent-labile) and carnitine palmitoyltransferase II (which is located in the inner membrane and is detergent-stable), together with a carnitine-acylcarnitine translocase. CPT I is the key enzyme in the carnitine-dependent transport across the mitochondrial inner membrane and its deficiency results in a decreased rate of fatty acid beta-oxidation. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
GeneCards Summary for CPT1A Gene
CPT1A (Carnitine Palmitoyltransferase 1A) is a Protein Coding gene. Diseases associated with CPT1A include Carnitine Palmitoyltransferase I Deficiency and Carnitine Palmitoyltransferase Ii Deficiency, Infantile. Among its related pathways are Signaling by Retinoic Acid and Signaling by GPCR. Gene Ontology (GO) annotations related to this gene include identical protein binding and carnitine O-palmitoyltransferase activity. An important paralog of this gene is CPT1B.
UniProtKB/Swiss-Prot Summary for CPT1A Gene
-
Catalyzes the transfer of the acyl group of long-chain fatty acid-CoA conjugates onto carnitine, an essential step for the mitochondrial uptake of long-chain fatty acids and their subsequent beta-oxidation in the mitochondrion (PubMed:9691089, PubMed:11350182, PubMed:14517221). Plays an important role in hepatic triglyceride metabolism (By similarity).
Additional gene information for CPT1A Gene
No data available for CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CPT1A Gene
Genomics for CPT1A Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for CPT1A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around CPT1A on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for CPT1A
- Top Transcription factor binding sites by QIAGEN in the CPT1A gene promoter:
-
- AP-2alpha
- AP-2alpha isoform 2
- AP-2alpha isoform 3
Genomic Locations for CPT1A Gene
Latest Assembly
- chr11:68,754,620-68,844,410
- (GRCh38/hg38)
- Size:
- 89,791 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:68,522,088-68,609,384
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 87,297 bases
- Orientation:
- Minus strand
Genomic View for CPT1A Gene
Genes around CPT1A on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q13.3 by HGNC
- 11q13.3 by Entrez Gene
- 11q13.3 by Ensembl
CPT1A Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CPT1A Gene
Proteins for CPT1A Gene
-
Protein details for CPT1A Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P50416-CPT1A_HUMAN
- Recommended name:
- Carnitine O-palmitoyltransferase 1, liver isoform
- Protein Accession:
- P50416
- Q8TCU0
- Q9BWK0
Protein attributes for CPT1A Gene
- Size:
- 773 amino acids
- Molecular mass:
- 88368 Da
- Quaternary structure:
-
- Homohexamer and homotrimer (By similarity). Identified in a complex that contains at least CPT1A, ACSL1 and VDAC1 (By similarity). Also identified in complexes with ACSL1 and VDAC2 and VDAC3 (By similarity).
Protein Expression for CPT1A Gene
Selected DME Specific Peptides for CPT1A Gene
- P50416:
-
- EVLSEPW
- SPDAFVQ
- YRLAMTG
- IHAILLYR
- RIPGEETDTIQH
- GKFCLTYEASMTR
- LLSYHGWMF
- FREGRTETVRSC
- AAFFVTLDE
- MSSQTKN
- PMLYSFQTSLP
- GGGFGPVAD
- NYVSDWWEE
- RWFDKSF
- PETDSHRFG
Post-translational modifications for CPT1A Gene
Other Protein References for CPT1A Gene
Antibodies for research
- LifeSpan BioSciences CPT1A Antibody
- G Biosciences Immunotag™ CPT1A Antibody
- NSJ Bioreagents CPT1A Antibody
-
Custom Antibody ServicesOriGene Antibodies for CPT1A
- Novus Biologicals Antibodies for CPT1A
-
Abcam antibodies for CPT1A
- Invitrogen Antibodies for CPT1A (AFLGC-Cpt1a)
-
Boster Bio Antibodies for CPT1A
-
Custom Antibody ServicesProSci Antibodies for CPT1A
- carnitine palmitoyltransferase 1A (liver) [19-575]
- carnitine palmitoyltransferase 1A (liver) [26-009]
- carnitine palmitoyltransferase 1A (liver) [45-426]
- carnitine palmitoyltransferase 1a, liver [46-959]
- Carnitine O-palmitoyltransferase 1, liver isoform [57-900]
- Carnitine O-palmitoyltransferase 1, liver isoform [61-413]
-
Santa Cruz Biotechnology (SCBT) Antibodies for CPT1A
Protein products for research
-
OriGene Purified Proteins for CPT1A
- Search Origene for MassSpec and Protein Over-expression Lysates for CPT1A
- Origene Custom Protein Services for CPT1A
-
Abcam proteins for CPT1A
Assay products for research
- antibodies-online: Show 44 available CPT1A Elisa Kits ranked by validation data
- Compare Top CPT1A Elisa Kits
-
Quality Products:
- ABIN420986
- ABIN1569151
- ABIN4947433
- ABIN1884533
- ABIN5523075
- ABIN5593615
- ABIN455947
- ABIN510374
- ABIN5652613
- ABIN5652616
- ABIN428361
- ABIN813041
- ABIN1569152
- ABIN5652614
- ABIN4968352
- ABIN2542489
- ABIN6213910
- ABIN990018
- ABIN455948
- ABIN435254
- ABIN1569153
- ABIN5523076
- ABIN578885
- ABIN5652615
- ABIN4968353
- ABIN2542490
- ABIN6213913
- ABIN510071
- ABIN5073597
Domains & Families for CPT1A Gene
Gene Families for CPT1A Gene
- Human Protein Atlas (HPA):
-
- Disease related genes
- Enzymes
- FDA approved drug targets
- Plasma proteins
- Predicted intracellular proteins
- Predicted membrane proteins
- Transporters
Protein Domains for CPT1A Gene
- InterPro:
- Blocks:
-
- Acyltransferase ChoActase/COT/CPT
Suggested Antigen Peptide Sequences for CPT1A Gene
- GenScript: Design optimal peptide antigens:
-
- Carnitine palmitoyltransferase 1A (CPT1A_HUMAN)
- Carnitine palmitoyltransferase I (Q8WZ48_HUMAN)
Graphical View of Domain Structure for InterPro Entry
P50416UniProtKB/Swiss-Prot:
CPT1A_HUMAN :- A conformation change in the N-terminal region spanning the first 42 residues plays an important role in the regulation of enzyme activity by malonyl-CoA.
- Belongs to the carnitine/choline acetyltransferase family.
- Domain:
-
- A conformation change in the N-terminal region spanning the first 42 residues plays an important role in the regulation of enzyme activity by malonyl-CoA.
- Family:
-
- Belongs to the carnitine/choline acetyltransferase family.
Function for CPT1A Gene
Molecular function for CPT1A Gene
- UniProtKB/Swiss-Prot Function:
- Catalyzes the transfer of the acyl group of long-chain fatty acid-CoA conjugates onto carnitine, an essential step for the mitochondrial uptake of long-chain fatty acids and their subsequent beta-oxidation in the mitochondrion (PubMed:9691089, PubMed:11350182, PubMed:14517221). Plays an important role in hepatic triglyceride metabolism (By similarity).
- UniProtKB/Swiss-Prot CatalyticActivity:
- Reaction=(R)-carnitine + hexadecanoyl-CoA = CoA + O-hexadecanoyl-(R)-carnitine; Xref=Rhea:RHEA:12661, ChEBI:CHEBI:16347, ChEBI:CHEBI:17490, ChEBI:CHEBI:57287, ChEBI:CHEBI:57379; EC=2.3.1.21; Evidence={ECO:0000269|PubMed:11350182, ECO:0000269|PubMed:14517221, ECO:0000269|PubMed:9691089};.
- UniProtKB/Swiss-Prot Induction:
- Up-regulated by fatty acids.
- UniProtKB/Swiss-Prot BiophysicochemicalProperties:
- Kinetic parameters: KM=89 uM for carnitine {ECO:0000269|PubMed:11350182}; KM=106.5 uM for carnitine {ECO:0000269|PubMed:14517221}; KM=43 uM for palmitoyl-CoA {ECO:0000269|PubMed:11350182}; KM=82.8 uM for palmitoyl-CoA {ECO:0000269|PubMed:14517221}; Vmax=15 nmol/min/mg enzyme toward carnitine {ECO:0000269|PubMed:11350182}; Vmax=147.8 nmol/min/mg enzyme toward carnitine {ECO:0000269|PubMed:14517221}; Vmax=40 nmol/min/mg enzyme toward palmitoyl-CoA {ECO:0000269|PubMed:11350182}; Vmax=88.6 nmol/min/mg enzyme toward palmitoyl-CoA {ECO:0000269|PubMed:14517221};
- UniProtKB/Swiss-Prot EnzymeRegulation:
- Inhibited by malonyl-CoA.
- GENATLAS Biochemistry:
- carnitine palmitoyltransferase of the outer mitochondrial membrane 1A,88kDa,malonyl CoA sensitive,liver isoform,generating palmitoylcarnitine and CoAsH (palmitoyl-CoA shuttle system)
Enzyme Numbers (IUBMB) for CPT1A Gene
Phenotypes From GWAS Catalog for CPT1A Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004095 | carnitine O-palmitoyltransferase activity | TAS,IMP | 9691089 |
| GO:0016740 | transferase activity | IEA | -- |
| GO:0016746 | transferase activity, transferring acyl groups | IEA | -- |
| GO:0042802 | identical protein binding | IEA | -- |
| GO:1990698 | palmitoleoyltransferase activity | IEA | -- |
Phenotypes for CPT1A Gene
- MGI mutant phenotypes for CPT1A:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for CPT1A:
Animal Models for CPT1A Gene
- MGI Knock Outs for CPT1A:
-
- Cpt1a Cpt1a<tm1Pwo>
Animal Models for research
-
Taconic Biosciences Mouse Models for CPT1A
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for CPT1A - Starting at $85 >
- * CPT1A CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for CPT1A
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for CPT1A
-
Santa Cruz Biotechnology (SCBT) CRISPR for CPT1A
miRNA for CPT1A Gene
- miRTarBase miRNAs that target CPT1A
-
- hsa-miR-370-3p (MIRT004535)
- hsa-miR-155-5p (MIRT020838)
- hsa-miR-16-5p (MIRT031747)
- hsa-miR-197-3p (MIRT048093)
- hsa-miR-5581-3p (MIRT538397)
- hsa-miR-6716-5p (MIRT538398)
- hsa-miR-1298-5p (MIRT538399)
- hsa-miR-194-3p (MIRT538400)
- hsa-miR-1324 (MIRT538401)
- hsa-miR-6789-3p (MIRT637837)
- hsa-miR-4707-3p (MIRT637838)
- hsa-miR-4258 (MIRT637839)
- hsa-miR-153-5p (MIRT637840)
- hsa-miR-1250-3p (MIRT637841)
- hsa-miR-129-5p (MIRT659384)
- hsa-miR-7151-3p (MIRT659385)
- hsa-miR-5095 (MIRT659386)
- hsa-miR-4438 (MIRT659387)
- hsa-miR-5089-5p (MIRT688663)
- hsa-miR-6878-3p (MIRT688664)
- hsa-miR-6744-3p (MIRT688665)
- hsa-miR-4757-5p (MIRT688666)
- hsa-miR-5589-5p (MIRT688667)
- hsa-miR-4731-5p (MIRT688668)
- hsa-miR-6778-3p (MIRT688669)
- hsa-miR-6506-5p (MIRT688670)
- hsa-miR-619-5p (MIRT688671)
- hsa-miR-150-5p (MIRT688672)
- hsa-miR-212-5p (MIRT688673)
- hsa-miR-186-3p (MIRT688674)
- hsa-miR-520h (MIRT688675)
- hsa-miR-520g-3p (MIRT688676)
- hsa-miR-512-3p (MIRT688677)
- hsa-miR-93-5p (MIRT688678)
- hsa-miR-526b-3p (MIRT688679)
- hsa-miR-519d-3p (MIRT688680)
- hsa-miR-20b-5p (MIRT688681)
- hsa-miR-20a-5p (MIRT688682)
- hsa-miR-17-5p (MIRT688683)
- hsa-miR-106b-5p (MIRT688684)
- hsa-miR-106a-5p (MIRT688685)
- hsa-miR-520e (MIRT704466)
- hsa-miR-520d-3p (MIRT704467)
- hsa-miR-520c-3p (MIRT704468)
- hsa-miR-520b (MIRT704469)
- hsa-miR-520a-3p (MIRT704470)
- hsa-miR-372-3p (MIRT704471)
- hsa-miR-373-3p (MIRT704472)
- hsa-miR-302e (MIRT704473)
- hsa-miR-302d-3p (MIRT704474)
- hsa-miR-302c-3p (MIRT704475)
- hsa-miR-302a-3p (MIRT704476)
- hsa-miR-302b-3p (MIRT704477)
- hsa-miR-7162-3p (MIRT704478)
- hsa-miR-4786-5p (MIRT704479)
- hsa-miR-544b (MIRT704480)
- hsa-miR-6849-3p (MIRT704481)
- hsa-miR-4459 (MIRT704482)
- hsa-miR-4433a-3p (MIRT704483)
- hsa-miR-4768-3p (MIRT704484)
- hsa-miR-3622b-3p (MIRT704485)
- hsa-miR-3622a-3p (MIRT704486)
- hsa-miR-1272 (MIRT704487)
- hsa-miR-1322 (MIRT704488)
- hsa-miR-4293 (MIRT704489)
- hsa-miR-4517 (MIRT704490)
- hsa-miR-4322 (MIRT725559)
- hsa-miR-4296 (MIRT725560)
- hsa-miR-4265 (MIRT725561)
- hsa-miR-6514-3p (MIRT725562)
- hsa-miR-4666b (MIRT725563)
- hsa-miR-7977 (MIRT725564)
- hsa-miR-4417 (MIRT725565)
- hsa-miR-6781-5p (MIRT725566)
- hsa-miR-6877-5p (MIRT725567)
- hsa-miR-24-3p (MIRT725568)
- hsa-miR-4284 (MIRT725569)
- hsa-miR-6847-3p (MIRT725570)
- hsa-miR-6811-3p (MIRT725571)
- hsa-miR-214-5p (MIRT725572)
- hsa-miR-6869-3p (MIRT725573)
- hsa-miR-299-3p (MIRT725574)
- hsa-miR-33a-5p (MIRT731519)
- rno-miR-107-3p (MIRT735278)
miRNA products for research
Inhibitory RNAs for research
- Origene shrna, sirna, and RNAi products in human, mouse, rat for CPT1A
- Browse OriGene Inhibitory RNA Products For CPT1A
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CPT1A
Clone products for research
- Applied Biological Materials (abm): Clones for CPT1A - Starting at $45 >
- * CPT1A as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
-
- MG210568
- MR210568
- MR210568L3
- MR210568L4
- RC200485
- RC200485L1
- RC200485L2
- RC200485L3
- RC200485L4
- RC221740
- RC221740L1
- RC221740L2
- RC221740L3
- RC221740L4
- RG200485
- RG221740
- RR202656
- RR202656L3
- RR202656L4
- MR210568L3V
- MR210568L4V
- RC200485L1V
- RC200485L2V
- RC200485L3V
- RC200485L4V
- RC221740L1V
- RC221740L2V
- RC221740L3V
- RC221740L4V
- RR202656L3V
- RR202656L4V
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for CPT1A
- Addgene plasmids for CPT1A
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for CPT1A
Cell Lines for research
-
Horizon Cell Lines for CPT1A
No data available for Transcription Factor Targets and HOMER Transcription for CPT1A Gene
Localization for CPT1A Gene
Subcellular locations from UniProtKB/Swiss-Prot for CPT1A Gene
- Mitochondrion outer membrane. Multi-pass membrane protein.
| Compartment | Confidence |
|---|---|
| mitochondrion | 5 |
| peroxisome | 4 |
| nucleus | 3 |
| cytosol | 3 |
| plasma membrane | 2 |
| extracellular | 2 |
| cytoskeleton | 2 |
| endoplasmic reticulum | 2 |
| lysosome | 2 |
| endosome | 1 |
| golgi apparatus | 1 |
- Mitochondria (3)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005739 | mitochondrion | TAS,IDA | 11350182 |
| GO:0005741 | mitochondrial outer membrane | TAS | -- |
| GO:0016020 | membrane | IEA,HDA | 19946888 |
| GO:0016021 | integral component of membrane | IEA | -- |
| GO:0031307 | integral component of mitochondrial outer membrane | ISS | -- |
Pathways & Interactions for CPT1A Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | AMP-activated Protein Kinase (AMPK) Signaling | ||
| 2 | Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha) | ||
| 3 | Fatty Acyl-CoA Biosynthesis | ||
| 4 | AMPK Enzyme Complex Pathway |
AMPK Enzyme Complex Pathway
-
|
|
| 5 | BMAL1-CLOCK,NPAS2 activates circadian gene expression |
.68
|
|
Pathways by source for CPT1A Gene
1 Sino Biological pathway for CPT1A Gene
8 BioSystems pathways for CPT1A Gene
10 Reactome pathways for CPT1A Gene
8 KEGG pathways for CPT1A Gene
1 GeneGo (Thomson Reuters) pathway for CPT1A Gene
- Development_Leptin signaling via PI3K-dependent pathway
1 Qiagen pathway for CPT1A Gene
- AMPK Enzyme Complex Pathway
1 Cell Signaling Technology pathway for CPT1A Gene
UniProtKB/Swiss-Prot P50416-CPT1A_HUMAN
- Pathway: Lipid metabolism; fatty acid beta-oxidation.
Interacting Proteins for CPT1A Gene
Selected Interacting proteins:
P50416-CPT1A_HUMAN
ENSP00000265641
for CPT1A Gene via
MINT
STRING
IID
GPS-Prot Interaction Network for CPT1A
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0001676 | long-chain fatty acid metabolic process | IDA | 11350182 |
| GO:0006006 | glucose metabolic process | IEA | -- |
| GO:0006629 | lipid metabolic process | IEA | -- |
| GO:0006631 | fatty acid metabolic process | IBA | 21873635 |
| GO:0006635 | fatty acid beta-oxidation | TAS,IEA | -- |
Drugs & Compounds for CPT1A Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Perhexiline | Approved, Investigational | Pharma | Target, inhibitor | 9 | ||
| L-Carnitine | Approved, Investigational | Pharma | Target, activator | 0 | ||
| Glyburide | Approved | Pharma | Target, inhibitor | Kir6 (KATP) channel blocker | 126 | |
| Glycerol | Approved, Investigational | Pharma | 207 | |||
| Trierucin | Investigational | Pharma | 0 |
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs | |
|---|---|---|---|---|---|---|
| hexadecanoyl-CoA |
|
|
||||
| L-Palmitoylcarnitine |
|
2364-67-2 |
|
|||
| Palmityl-CoA |
|
1763-10-6 |
|
|||
| Torvoside G |
|
184777-22-8, 30719-27-8 |
|
|||
| Triglycerides Group A |
|
555-45-3, 2190-24-1, 18641-57-1, 56933-26-7 |
|
(2) ApexBio Compounds for CPT1A Gene
| Compound | Action | Cas Number |
|---|---|---|
| (R)-(+)-Etomoxir sodium salt | 828934-41-4 | |
| Etomoxir | (CPT)-1 and DGAT activity inhibitor | 124083-20-1 |
Transcripts for CPT1A Gene
mRNA/cDNA for CPT1A Gene
- 2 REFSEQ mRNAs :
- 11 NCBI additional mRNA sequence :
- 9 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000265641 5238 nts (view in UCSC)
- ENST00000376618 2635 nts (view in UCSC)
- ENST00000537756 585 nts (view in UCSC)
- ENST00000538994 617 nts (view in UCSC)
- ENST00000539743 2382 nts (view in UCSC)
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for CPT1A - Starting at $85 >
- * CPT1A CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for CPT1A
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for CPT1A
-
Santa Cruz Biotechnology (SCBT) CRISPR for CPT1A
miRNA products for research
Inhibitory RNAs for research
- Origene shrna, sirna, and RNAi products in human, mouse, rat for CPT1A
- Browse OriGene Inhibitory RNA Products For CPT1A
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CPT1A
Clone products for research
- Applied Biological Materials (abm): Clones for CPT1A - Starting at $45 >
- * CPT1A as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
-
- MG210568
- MR210568
- MR210568L3
- MR210568L4
- RC200485
- RC200485L1
- RC200485L2
- RC200485L3
- RC200485L4
- RC221740
- RC221740L1
- RC221740L2
- RC221740L3
- RC221740L4
- RG200485
- RG221740
- RR202656
- RR202656L3
- RR202656L4
- MR210568L3V
- MR210568L4V
- RC200485L1V
- RC200485L2V
- RC200485L3V
- RC200485L4V
- RC221740L1V
- RC221740L2V
- RC221740L3V
- RC221740L4V
- RR202656L3V
- RR202656L4V
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for CPT1A
- Addgene plasmids for CPT1A
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for CPT1A
Relevant External Links for CPT1A Gene
- GeneLoc Exon Structure for
- CPT1A
Expression for CPT1A Gene
This gene is overexpressed in Nasal epithelium (13.6) and Peripheral blood mononuclear cells (8.4).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CPT1A Gene
- Elite partner
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CPT1A
SOURCE GeneReport for Unigene cluster for CPT1A Gene:
Hs.503043mRNA Expression by UniProt/SwissProt for CPT1A Gene:
P50416-CPT1A_HUMAN
Tissue specificity:
Strong expression in kidney and heart, and lower in liver and skeletal muscle.
Evidence on tissue expression from TISSUES for CPT1A Gene
- Liver(4.7)
- Eye(4.4)
- Heart(3)
- Intestine(3)
- Blood(2.8)
- Muscle(2.8)
- Kidney(2.7)
- Nervous system(2.6)
- Pancreas(2.5)
- Stomach(2.3)
- Skin(2.3)
- Spleen(2.3)
- Thyroid gland(2.2)
- Bone marrow(2.1)
- Adrenal gland(2.1)
- Lung(2)
Phenotype-based relationships between genes and organs from Gene ORGANizer for CPT1A Gene
Germ Layers:
- ectoderm
- endoderm
- mesoderm
Systems:
- cardiovascular
- digestive
- endocrine
- integumentary
- nervous
- skeletal muscle
- skeleton
- urinary
Regions:
Head and neck:
- brain
- cranial nerve
- ear
- eye
- head
Thorax:
- heart
- heart valve
Abdomen:
- adrenal gland
- intestine
- kidney
- large intestine
- liver
- pancreas
- small intestine
General:
- blood vessel
- peripheral nerve
- peripheral nervous system
- skin
- spinal cord
- sweat gland
Primer products for research
-
OriGene qPCR primer pairs for CPT1A
-
OriGene qPCR primer pairs and template standards for CPT1A
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for CPT1A Gene
Orthologs for CPT1A Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | CPT1A 29 30 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | CPT1A 30 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | CPT1A 29 30 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | CPT1A 29 30 |
|
OneToOne | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | CPT1A 30 |
|
OneToOne | |
| Mouse (Mus musculus) |
Mammalia | Cpt1a 29 16 30 |
|
OneToOne | |
| Rat (Rattus norvegicus) |
Mammalia | Cpt1a 29 |
|
||
| Chicken (Gallus gallus) |
Aves | CPT1A 29 30 |
|
OneToOne | |
| Lizard (Anolis carolinensis) |
Reptilia | CPT1A 30 |
|
OneToOne | |
| Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | LOC100490391 29 |
|
||
| Str.5281 29 |
|
||||
| African clawed frog (Xenopus laevis) |
Amphibia | MGC53498 29 |
|
||
| Zebrafish (Danio rerio) |
Actinopterygii | CPT1A (3 of 3) 30 |
|
OneToMany | |
| cpt1a 30 |
|
OneToMany | |||
| si:ch211-236l14.3 29 |
|
||||
| CABZ01055343.2 30 |
|
OneToMany | |||
| Fruit Fly (Drosophila melanogaster) |
Insecta | CPTI 31 |
|
|
|
| whd 30 |
|
OneToMany | |||
| Worm (Caenorhabditis elegans) |
Secernentea | Y46G5A.17 31 |
|
|
|
| cpt-1 30 |
|
OneToMany | |||
| W03F9.4 31 |
|
|
|||
| W01A11.5 31 |
|
|
|||
| K11D12.4 31 |
|
|
|||
| Y48G9A.10 31 |
|
|
|||
| Sea Squirt (Ciona savignyi) |
Ascidiacea | -- 30 |
|
OneToMany | |
| Sea Vase (Ciona intestinalis) |
Ascidiacea | Cin.3088 29 |
|
- Species where no ortholog for CPT1A was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Wheat (Triticum aestivum)
Evolution for CPT1A Gene
- ENSEMBL:
- Gene Tree for CPT1A (if available)
- TreeFam:
- Gene Tree for CPT1A (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for CPT1A: view image
- Alliance of Genome Resources:
- Additional Orthologs for CPT1A
Paralogs for CPT1A Gene
Variants for CPT1A Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CPT1A Gene
| SNP ID | Clinical significance and condition | Chr 11 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 1005159 | Uncertain Significance: Carnitine palmitoyltransferase 1A deficiency | 68,775,373(-) |
G/A NM_001876.4(CPT1A):c.1518C>T (p.Gly506=) |
SYNONYMOUS | |
| 1010287 | Uncertain Significance: Carnitine palmitoyltransferase 1A deficiency | 68,812,476(-) |
AACGAGGGGTCGATCT
NM_001876.4(CPT1A):c.221_241del (p.Tyr74_Ser80del) |
INFRAME_DELETION | |
| 1014808 | Uncertain Significance: Carnitine palmitoyltransferase 1A deficiency | 68,815,374(-) |
G/A NM_001876.4(CPT1A):c.101C>T (p.Ser34Phe) |
MISSENSE | |
| 1018533 | Uncertain Significance: Carnitine palmitoyltransferase 1A deficiency | 68,760,219(-) |
A/G NM_001876.4(CPT1A):c.2142+6T>C |
INTRON | |
| 1029388 | Pathogenic: Carnitine palmitoyltransferase 1A deficiency | 68,759,578(-) |
G/T NM_001876.4(CPT1A):c.2226C>A (p.Cys742Ter) |
NONSENSE |
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2664873 | CNV | deletion | 23128226 |
| esv2744667 | CNV | deletion | 23290073 |
| esv3626741 | CNV | loss | 21293372 |
| nsv1122639 | CNV | deletion | 24896259 |
| nsv1133169 | CNV | tandem duplication | 24896259 |
| nsv1134152 | CNV | deletion | 24896259 |
| nsv1144574 | CNV | deletion | 24896259 |
| nsv373 | CNV | deletion | 18451855 |
| nsv428261 | CNV | gain | 18775914 |
| nsv509422 | CNV | insertion | 20534489 |
| nsv825967 | CNV | loss | 20364138 |
| nsv825968 | CNV | loss | 20364138 |
| nsv825969 | CNV | gain | 20364138 |
Residual Variation Intolerance Score:
38.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
3.79;
58.17% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for CPT1A Gene
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CPT1A Gene
Disorders for CPT1A Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| carnitine palmitoyltransferase i deficiency |
|
|
| carnitine palmitoyltransferase ii deficiency, infantile |
|
|
| carnitine-acylcarnitine translocase deficiency |
|
|
| hypoglycemia |
|
|
| visceral steatosis |
|
|
Search CPT1A in MalaCards
View complete list of genes associated with diseases
UniProtKB/Swiss-Prot
CPT1A_HUMAN- Carnitine palmitoyltransferase 1A deficiency (CPT1AD) [MIM:255120]: Rare autosomal recessive metabolic disorder of long-chain fatty acid oxidation characterized by severe episodes of hypoketotic hypoglycemia usually occurring after fasting or illness. Onset is in infancy or early childhood. {ECO:0000269 PubMed:11350182, ECO:0000269 PubMed:11441142, ECO:0000269 PubMed:12111367, ECO:0000269 PubMed:12189492, ECO:0000269 PubMed:14517221, ECO:0000269 PubMed:15110323, ECO:0000269 PubMed:15669684, ECO:0000269 PubMed:9691089}. Note=The disease is caused by variants affecting the gene represented in this entry.
Genatlas disease for CPT1A Gene
non ketotic hypoglycemia,infant form,Reye-like syndrome,sudden infant death syndrome
Additional Disease Information for CPT1A
- Human Genome Epidemiology Navigator
- (HuGE)
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
Publications for CPT1A Gene
- Structural model of carnitine palmitoyltransferase I based on the carnitine acetyltransferase crystal. (PMID: 14711372) Morillas M … Asins G (The Biochemical journal 2004) 3 4 22 25
- Organization of the human liver carnitine palmitoyltransferase 1 gene ( CPT1A) and identification of novel mutations in hypoketotic hypoglycaemia. (PMID: 12189492) Gobin S … Thuillier L (Human genetics 2002) 3 4 22 72
- Molecular basis of hepatic carnitine palmitoyltransferase I deficiency. (PMID: 9691089) IJlst L … Wanders RJ (The Journal of clinical investigation 1998) 3 4 22 72
- Human liver mitochondrial carnitine palmitoyltransferase I: characterization of its cDNA and chromosomal localization and partial analysis of the gene. (PMID: 7892212) Britton CH … McGarry JD (Proceedings of the National Academy of Sciences of the United States of America 1995) 2 3 4 22
- Variants within the muscle and liver isoforms of the carnitine palmitoyltransferase I (CPT1) gene interact with fat intake to modulate indices of obesity in French-Canadians. (PMID: 17089095) Robitaille J … Vohl MC (Journal of molecular medicine (Berlin, Germany) 2007) 3 22 40
ExternalLinks
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- carnitine palmitoyltransferase 1A (liver) [19-575]
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