Aliases for CPHXL Gene

Aliases for CPHXL Gene

  • Cytoplasmic Polyadenylated Homeobox Like 2 3 5
  • Cytoplasmic Polyadenylated Homeobox-Like 3 4
  • Cytoplasmic Polyadenylated Homeobox 1 3 4
  • CPHXL1 3
  • CPHXL 5
  • CPHX1 4

External Ids for CPHXL Gene

Summaries for CPHXL Gene

GeneCards Summary for CPHXL Gene

CPHXL (Cytoplasmic Polyadenylated Homeobox Like) is a Protein Coding gene. An important paralog of this gene is ENSG00000284484.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CPHXL Gene

Genomics for CPHXL Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CPHXL Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J075727 Enhancer 0.8 Ensembl ENCODE 600.7 -1.0 -982 0.3 GATAD2A RXRB SP1 GABPA CEBPA SOX13 TCF7 FOXA2 SAP130 FOSL2 CPHXL MN309174-253 TERF2IP CNTNAP4
GH16J075732 Enhancer 0.8 Ensembl ENCODE 0.4 -7.2 -7211 1.8 IKZF1 HDAC1 EGR1 CTBP1 FOS ZFHX2 KDM1A MEIS2 KLF1 ZNF217 ADAT1 TMEM170A MN309174-253 CPHXL TERF2IP CNTNAP4
GH16J075702 Enhancer 0.8 Ensembl 0.4 +24.2 24189 0.2 LEF1 IKZF1 JUND PKNOX1 DPF2 HDAC1 SOX6 TCF12 EP300 MGA DUXB piR-60246-068 CPHXL TERF2IP
GH16J075703 Enhancer 0.8 Ensembl 0.4 +23.7 23690 0.4 LEF1 IKZF1 PKNOX1 DPF2 HDAC1 SOX6 MGA CBX3 ZBTB5 TBL1XR1 DUXB CHST5 piR-60246-068 CPHXL TERF2IP
GH16J075761 Enhancer 0.7 Ensembl 0.3 -34.9 -34939 0.9 CREB1 PKNOX1 MTA1 POLR2A TRIM22 EED MGA ARID3A DPF2 ASH2L LOC105371348 NONHSAG020022.2 piR-57461-081 CHST5 CPHXL TERF2IP CNTNAP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CPHXL on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for CPHXL

Genomic Locations for CPHXL Gene

Genomic Locations for CPHXL Gene
chr16:75,714,131-75,726,490
(GRCh38/hg38)
Size:
12,360 bases
Orientation:
Minus strand

Genomic View for CPHXL Gene

Genes around CPHXL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPHXL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPHXL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPHXL Gene

Proteins for CPHXL Gene

  • Protein details for CPHXL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1W2PPM1-CPHXL_HUMAN
    Recommended name:
    Cytoplasmic polyadenylated homeobox-like
    Protein Accession:
    A0A1W2PPM1

    Protein attributes for CPHXL Gene

    Size:
    405 amino acids
    Molecular mass:
    45714 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CPHXL Gene

Post-translational modifications for CPHXL Gene

No Post-translational modifications

Other Protein References for CPHXL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CPHXL Gene

Domains & Families for CPHXL Gene

Gene Families for CPHXL Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CPHXL Gene

genes like me logo Genes that share domains with CPHXL: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CPHXL Gene

Function for CPHXL Gene

Phenotypes From GWAS Catalog for CPHXL Gene

Gene Ontology (GO) - Molecular Function for CPHXL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0043565 sequence-specific DNA binding IBA 21873635
genes like me logo Genes that share ontologies with CPHXL: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CPHXL Gene

Localization for CPHXL Gene

Subcellular locations from UniProtKB/Swiss-Prot for CPHXL Gene

Gene Ontology (GO) - Cellular Components for CPHXL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA 21873635
GO:0016586 RSC-type complex IBA 21873635
genes like me logo Genes that share ontologies with CPHXL: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CPHXL Gene

Pathways & Interactions for CPHXL Gene

PathCards logo

SuperPathways for CPHXL Gene

No Data Available

Interacting Proteins for CPHXL Gene

Gene Ontology (GO) - Biological Process for CPHXL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006357 regulation of transcription by RNA polymerase II IBA 21873635
GO:0030182 neuron differentiation IBA 21873635
genes like me logo Genes that share ontologies with CPHXL: view

No data available for Pathways by source and SIGNOR curated interactions for CPHXL Gene

Drugs & Compounds for CPHXL Gene

No Compound Related Data Available

Transcripts for CPHXL Gene

mRNA/cDNA for CPHXL Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CPHXL Gene

No ASD Table

Relevant External Links for CPHXL Gene

GeneLoc Exon Structure for
CPHXL

Expression for CPHXL Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CPHXL Gene

Orthologs for CPHXL Gene

Evolution for CPHXL Gene

ENSEMBL:
Gene Tree for CPHXL (if available)
TreeFam:
Gene Tree for CPHXL (if available)

No data available for Orthologs for CPHXL Gene

Paralogs for CPHXL Gene

Paralogs for CPHXL Gene

genes like me logo Genes that share paralogs with CPHXL: view

Variants for CPHXL Gene

Additional dbSNP identifiers (rs#s) for CPHXL Gene

Additional Variant Information for CPHXL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPHXL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CPHXL Gene

Disorders for CPHXL Gene

No disorders were found for CPHXL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPHXL Gene

Publications for CPHXL Gene

  1. A family history of DUX4: phylogenetic analysis of DUXA, B, C and Duxbl reveals the ancestral DUX gene. (PMID: 21110847) Leidenroth A … Hewitt JE (BMC evolutionary biology 2010) 2 3
  2. Novel PRD-like homeodomain transcription factors and retrotransposon elements in early human development. (PMID: 26360614) Töhönen V … Kere J (Nature communications 2015) 3
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4

No data available for Mastermind for CPHXL Gene

Products for CPHXL Gene

Sources for CPHXL Gene