Aliases for CPHL1P Gene

Aliases for CPHL1P Gene

  • Ceruloplasmin And Hephaestin Like 1, Pseudogene 2 3 5
  • Ceruloplasmin And Hephaestin-Like 1 2 3
  • CPHL1 3

External Ids for CPHL1P Gene

Previous HGNC Symbols for CPHL1P Gene

  • CPHL1

Previous GeneCards Identifiers for CPHL1P Gene

  • GC03M146330
  • GC03M148949

Summaries for CPHL1P Gene

GeneCards Summary for CPHL1P Gene

CPHL1P (Ceruloplasmin And Hephaestin Like 1, Pseudogene) is a Pseudogene.

Additional gene information for CPHL1P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CPHL1P Gene

Genomics for CPHL1P Gene

GeneHancer (GH) Regulatory Elements for CPHL1P Gene

Promoters and enhancers for CPHL1P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J149293 Enhancer 0.3 Ensembl dbSUPER 500.7 -1.2 -1201 1.2 CPHL1P lnc-TM4SF18-1 TM4SF18 CP ENSG00000244468 piR-51855-024
GH03J149128 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.5 +160.9 160887 4.6 ZNF217 EP300 SIN3A NRF1 TCF12 USF1 POLR2G SP1 PHF8 ZFX HPS3 lnc-CP-5 HLTF TM4SF18 CPHL1P RF00994-690
GH03J149276 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 9.1 +14.5 14505 2 ZNF217 TCF12 FOXA1 CUX1 TEAD1 GATAD2B CTBP1 FOXA2 NR2F2 MBD2 CPHL1P piR-39098-156 lnc-TM4SF18-1 RF01045-110
GH03J149280 Enhancer 0.8 Ensembl ENCODE dbSUPER 10.1 +10.0 9967 2.6 ZNF316 MAFF MBD2 MAFK JUND GATA3 ZFX FOXA1 TM4SF18 CPHL1P WWTR1 piR-39098-156 lnc-TM4SF18-1 RF01045-110
GH03J149278 Enhancer 0.6 Ensembl ENCODE dbSUPER 8.8 +12.6 12585 1.3 BHLHE40 CPHL1P piR-39098-156 lnc-TM4SF18-1 RF01045-110
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CPHL1P on UCSC Golden Path with GeneCards custom track

Genomic Locations for CPHL1P Gene

Genomic Locations for CPHL1P Gene
chr3:149,229,356-149,291,800
(GRCh38/hg38)
Size:
62,445 bases
Orientation:
Minus strand
chr3:148,947,143-149,009,587
(GRCh37/hg19)
Size:
62,445 bases
Orientation:
Minus strand

Genomic View for CPHL1P Gene

Genes around CPHL1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPHL1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPHL1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPHL1P Gene

Proteins for CPHL1P Gene

Post-translational modifications for CPHL1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CPHL1P Gene

Domains & Families for CPHL1P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CPHL1P Gene

Function for CPHL1P Gene

Phenotypes From GWAS Catalog for CPHL1P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CPHL1P Gene

Localization for CPHL1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CPHL1P Gene

Pathways & Interactions for CPHL1P Gene

PathCards logo

SuperPathways for CPHL1P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CPHL1P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CPHL1P Gene

Drugs & Compounds for CPHL1P Gene

No Compound Related Data Available

Transcripts for CPHL1P Gene

mRNA/cDNA for CPHL1P Gene

4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CPHL1P Gene

No ASD Table

Relevant External Links for CPHL1P Gene

GeneLoc Exon Structure for
CPHL1P

Expression for CPHL1P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CPHL1P Gene

mRNA differential expression in normal tissues according to GTEx for CPHL1P Gene

This gene is overexpressed in Breast - Mammary Tissue (x32.3) and Testis (x4.0).
genes like me logo Genes that share expression patterns with CPHL1P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CPHL1P Gene

Orthologs for CPHL1P Gene

Evolution for CPHL1P Gene

ENSEMBL:
Gene Tree for CPHL1P (if available)
TreeFam:
Gene Tree for CPHL1P (if available)

No data available for Orthologs for CPHL1P Gene

Paralogs for CPHL1P Gene

No data available for Paralogs for CPHL1P Gene

Variants for CPHL1P Gene

Additional Variant Information for CPHL1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPHL1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CPHL1P Gene

Disorders for CPHL1P Gene

No disorders were found for CPHL1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CPHL1P Gene

Publications for CPHL1P Gene

  1. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PMID: 22589738) Fox CS … Borecki IB (PLoS genetics 2012) 3 54
  2. A third approach to gene prediction suggests thousands of additional human transcribed regions. (PMID: 16543943) Glusman G … Smit AF (PLoS computational biology 2006) 3 54
  3. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54

Products for CPHL1P Gene

Sources for CPHL1P Gene